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MS028023 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028023
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptiontranscription factor MYC2-like
Genome locationscaffold290:722967..723569
RNA-Seq ExpressionMS028023
SyntenyMS028023
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR025610 - Transcription factor MYC/MYB N-terminal
IPR045084 - Transcription factor AIB/MYC-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146202.3 transcription factor MYC3 isoform X2 [Cucumis sativus]6.1e-2355.93Show/hide
Query:  MDEM-VSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLF
        MDE+ +SP SSPNS N TLQQRLQFILHNR EWWAYSIFW  SKDI GNLVFTW DGH R        +   GGGGG QLISF                 
Subjt:  MDEM-VSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLF

Query:  YDELVVNRMEGGDFMDLE
        +D++ ++R+EGG+F++LE
Subjt:  YDELVVNRMEGGDFMDLE

XP_011650295.2 transcription factor bHLH14 isoform X1 [Cucumis sativus]6.1e-2355.93Show/hide
Query:  MDEM-VSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLF
        MDE+ +SP SSPNS N TLQQRLQFILHNR EWWAYSIFW  SKDI GNLVFTW DGH R        +   GGGGG QLISF                 
Subjt:  MDEM-VSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLF

Query:  YDELVVNRMEGGDFMDLE
        +D++ ++R+EGG+F++LE
Subjt:  YDELVVNRMEGGDFMDLE

XP_022145294.1 transcription factor bHLH28-like [Momordica charantia]7.6e-5899.1Show/hide
Query:  MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFY
        MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGG GGGQLISFKVEGGNKEREAMFHDLFY
Subjt:  MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFY

Query:  DELVVNRMEGG
        DELVVNRMEGG
Subjt:  DELVVNRMEGG

XP_023539515.1 transcription factor MYC2-like [Cucurbita pepo subsp. pepo]1.3e-2255.56Show/hide
Query:  SPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKD-ITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRM
        SPNS   TLQQ+LQFILHNR EWWAYSIFW  SKD +T NLVF WRDGHFRG+R+FVAR SK    G  QLISF                 +DE  V+R 
Subjt:  SPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKD-ITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRM

Query:  EGGDFMDLEGXCXXTRSITILFLIFD
        E  DF+DLE     T S+T LF + D
Subjt:  EGGDFMDLEGXCXXTRSITILFLIFD

XP_038876595.1 transcription factor MYC2-like [Benincasa hispida]7.9e-2355.83Show/hide
Query:  MDEM-VSP--CSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHD
        MDE+ +SP   SSPNS+  TLQQR+QFILHNR EWWAYSI W  SKDITGNLVFTW +G FR +R+     S  GGGG GQLISF               
Subjt:  MDEM-VSP--CSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHD

Query:  LFYDELVVNRMEGGDFMDLE
          +DE+VV+R+ G +F DLE
Subjt:  LFYDELVVNRMEGGDFMDLE

TrEMBL top hitse value%identityAlignment
A0A0A0L4Y4 BHLH domain-containing protein2.9e-2355.93Show/hide
Query:  MDEM-VSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLF
        MDE+ +SP SSPNS N TLQQRLQFILHNR EWWAYSIFW  SKDI GNLVFTW DGH R        +   GGGGG QLISF                 
Subjt:  MDEM-VSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLF

Query:  YDELVVNRMEGGDFMDLE
        +D++ ++R+EGG+F++LE
Subjt:  YDELVVNRMEGGDFMDLE

A0A6J1CUT9 transcription factor bHLH28-like3.7e-5899.1Show/hide
Query:  MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFY
        MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGG GGGQLISFKVEGGNKEREAMFHDLFY
Subjt:  MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFY

Query:  DELVVNRMEGG
        DELVVNRMEGG
Subjt:  DELVVNRMEGG

A0A6J1FP53 transcription factor MYC2-like6.5e-2355.56Show/hide
Query:  SPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKD-ITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRM
        SPNS   TLQQ+LQFILHNR EWWAYSIFW  SKD +T NLVF WRDGHFRG+R+FVAR SK    G  QLISF                 +DE  V+R 
Subjt:  SPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKD-ITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRM

Query:  EGGDFMDLEGXCXXTRSITILFLIFD
        E  DF+DLE     T S+T LF + D
Subjt:  EGGDFMDLEGXCXXTRSITILFLIFD

A0A6J1HNI1 transcription factor MYC2-like1.1e-2252.14Show/hide
Query:  DEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYD
        D  +S  SSPNS+  T+QQRLQFILHN P+W+AYSIFW  SKD   NL+F+W DG+FRG+R        +GGGGG QLISF                 +D
Subjt:  DEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYD

Query:  ELVVNRMEGGDFMDLEG
        E+ V+R E GDF DLEG
Subjt:  ELVVNRMEGGDFMDLEG

A0A6J1KYA9 transcription factor MYC2-like9.4e-2253.97Show/hide
Query:  SPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKD-ITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRM
        SPNS   TLQQ+LQFILHNR EWWAYSIFW  SKD +T NLVF WRDGHFRG+R+FVAR SK    G  QLISF                 +DE  V++ 
Subjt:  SPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKD-ITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRM

Query:  EGGDFMDLEGXCXXTRSITILFLIFD
        +  DF+DLE     T S+T LF + D
Subjt:  EGGDFMDLEGXCXXTRSITILFLIFD

SwissProt top hitse value%identityAlignment
A0A060KY90 Transcription factor MYC15.9e-0536.11Show/hide
Query:  PCSSPNSANP--------------TLQQRLQFILHNRPEWWAYSIFWQPS-KDITGNLVFTWRDGHFRGSRE
        P S+PN   P              +LQQRLQ ++    E WAY+IFWQ S  D     V  W DG+++G  +
Subjt:  PCSSPNSANP--------------TLQQRLQFILHNRPEWWAYSIFWQPS-KDITGNLVFTWRDGHFRGSRE

A0A3Q7HRZ6 Transcription factor MYC21.0e-0440Show/hide
Query:  SSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPS-KDITGNLVFTWRDGHFRGSREFVAR
        S P     TLQQRLQ ++    E W Y+IFWQ S  D +   V  W DG+++G  +   R
Subjt:  SSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPS-KDITGNLVFTWRDGHFRGSREFVAR

Q336P5 Transcription factor MYC27.0e-0644.83Show/hide
Query:  PCSSPNSA---NPTLQQRLQFILHNRPEWWAYSIFWQPSKDI-TGNLVFTWRDGHFRG
        P ++P +A     TLQQRLQ I+    E W Y+IFWQ S D+ TG  +  W DG+++G
Subjt:  PCSSPNSA---NPTLQQRLQFILHNRPEWWAYSIFWQPSKDI-TGNLVFTWRDGHFRG

Q39204 Transcription factor MYC21.7e-0748.94Show/hide
Query:  TLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSRE
        TLQQRLQ ++    E W Y+IFWQPS D +G  V  W DG+++G  +
Subjt:  TLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSRE

Q9FIP9 Transcription factor MYC37.7e-0536.36Show/hide
Query:  PNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDI---TGN--LVFTWRDGHFRGSREFVARSSKT
        P     TLQQRLQ ++ +  E W Y+IFWQ S D    TG+  ++  W DG+++G  +   + + T
Subjt:  PNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDI---TGN--LVFTWRDGHFRGSREFVARSSKT

Arabidopsis top hitse value%identityAlignment
AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein1.2e-0848.94Show/hide
Query:  TLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSRE
        TLQQRLQ ++    E W Y+IFWQPS D +G  V  W DG+++G  +
Subjt:  TLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSRE

AT4G00870.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein9.4e-0630.91Show/hide
Query:  SPCSSPNSANP--TLQQRLQFILHNRPEWWAYSIFWQPS-KDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDE
        +P +  +S+ P   LQQ+L+F++   P+ WAY IFWQ    D +      W DGHF G++   ++ + T      +L+   ++GG+ + E  +   FY E
Subjt:  SPCSSPNSANP--TLQQRLQFILHNRPEWWAYSIFWQPS-KDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDE

Query:  LVVNRMEGGD
            R E  D
Subjt:  LVVNRMEGGD

AT4G17880.1 Basic helix-loop-helix (bHLH) DNA-binding family protein1.0e-0432.81Show/hide
Query:  PCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITG-------NLVFTWRDGHFRGSRE
        P   P      LQQRLQ ++    E W Y++FWQ S    G        ++  W DG+++G  E
Subjt:  PCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITG-------NLVFTWRDGHFRGSRE

AT5G46760.1 Basic helix-loop-helix (bHLH) DNA-binding family protein5.5e-0636.36Show/hide
Query:  PNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDI---TGN--LVFTWRDGHFRGSREFVARSSKT
        P     TLQQRLQ ++ +  E W Y+IFWQ S D    TG+  ++  W DG+++G  +   + + T
Subjt:  PNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDI---TGN--LVFTWRDGHFRGSREFVARSSKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAAATGGTTTCTCCTTGTTCCTCTCCAAATTCAGCCAACCCTACGCTTCAACAGAGGCTGCAATTCATCCTCCATAATCGCCCTGAATGGTGGGCTTACTCCAT
TTTCTGGCAGCCTTCAAAGGACATCACTGGGAATCTTGTTTTCACTTGGAGAGATGGCCATTTTCGCGGCTCGAGGGAGTTCGTCGCCCGATCCTCGAAAACGGGCGGCG
GTGGCGGGGGACAACTGATTAGTTTCAAGGTGGAGGGCGGCAACAAGGAGAGGGAGGCAATGTTTCACGATTTGTTTTATGACGAATTGGTGGTGAATAGAATGGAAGGG
GGCGATTTCATGGACTTGGAAGGGTAATGTTAATAGACTCGTTCGATAACCATTTTGTTTTTAATTTTTGATCTTCGAAAATTAATGTCTAAACACTACTTTTTCATTTC
TATATTTCTTTGTTTTGCATCTGCTTCTTCCAAAATTCAATCCAAGTTTTGAAAACTAAAAAAAAAAAAAACTTAAAACTCGTCTTTATTTTTGTTTTTGAAATTTGACT
CAAAATTTAAATGTGTTTTTAAGGAAGGTGGAGACATGCTAAAGAAATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAAATGGTTTCTCCTTGTTCCTCTCCAAATTCAGCCAACCCTACGCTTCAACAGAGGCTGCAATTCATCCTCCATAATCGCCCTGAATGGTGGGCTTACTCCAT
TTTCTGGCAGCCTTCAAAGGACATCACTGGGAATCTTGTTTTCACTTGGAGAGATGGCCATTTTCGCGGCTCGAGGGAGTTCGTCGCCCGATCCTCGAAAACGGGCGGCG
GTGGCGGGGGACAACTGATTAGTTTCAAGGTGGAGGGCGGCAACAAGGAGAGGGAGGCAATGTTTCACGATTTGTTTTATGACGAATTGGTGGTGAATAGAATGGAAGGG
GGCGATTTCATGGACTTGGAAGGGTAATGTTAATAGACTCGTTCGATAACCATTTTGTTTTTAATTTTTGATCTTCGAAAATTAATGTCTAAACACTACTTTTTCATTTC
TATATTTCTTTGTTTTGCATCTGCTTCTTCCAAAATTCAATCCAAGTTTTGAAAACTAAAAAAAAAAAAAACTTAAAACTCGTCTTTATTTTTGTTTTTGAAATTTGACT
CAAAATTTAAATGTGTTTTTAAGGAAGGTGGAGACATGCTAAAGAAATTGTGA
Protein sequenceShow/hide protein sequence
MDEMVSPCSSPNSANPTLQQRLQFILHNRPEWWAYSIFWQPSKDITGNLVFTWRDGHFRGSREFVARSSKTGGGGGGQLISFKVEGGNKEREAMFHDLFYDELVVNRMEG
GDFMDLEGUCUUTRSITILFLIFDLRKLMSKHYFFISIFLCFASASSKIQSKFUKLKKKKTUNSSLFLFLKFDSKFKCVFKEGGDMLKKL