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MS028046 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028046
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionclassical arabinogalactan protein 9-like
Genome locationscaffold192:306848..307333
RNA-Seq ExpressionMS028046
SyntenyMS028046
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022923372.1 classical arabinogalactan protein 9-like [Cucurbita moschata]8.3e-2367.66Show/hide
Query:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAM-PPAATPPSMESSPSPGP
        MA A AMLVLALS LSLAASAIAQ+PSPAP PA  APPP TPPPV+APP +   PP  AMPP AASPPPS+S+PP A PP + PP A+PPSMES PS  P
Subjt:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAM-PPAATPPSMESSPSPGP

Query:  GPGPMPDSPPSPPNPSPSSMPSPGP--SPTPPPAPPSNPGSG-AVVHGGNKVA-VAAVLGGLAVLLV
        GP  MPDSPPSPP PSP   P P P  +P+PPP+PP  PG+G ++ HGG K A VAAVLGGLA++LV
Subjt:  GPGPMPDSPPSPPNPSPSSMPSPGP--SPTPPPAPPSNPGSG-AVVHGGNKVA-VAAVLGGLAVLLV

XP_023553563.1 classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]3.7e-2368.86Show/hide
Query:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPP-AMPPAATPPSMESSPSPGP
        MA A AMLVLALS LSLAASAIAQ+PSPAP PA  APPP TPPPV+APP +   PP  AMPP AASPPPS+S+PP A PP  +PP A+PPSMES PS  P
Subjt:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPP-AMPPAATPPSMESSPSPGP

Query:  GPGPMPDSPPSPPNPS--PSSMPSPGPSPTPPPAPPSNPGSG-AVVHGGNKVA-VAAVLGGLAVLLV
        GP  MPDSPPSPP PS  PSS PSP  +P+PPP+PP  PG+G ++ HGG K A VAAVLGGLA++LV
Subjt:  GPGPMPDSPPSPPNPS--PSSMPSPGPSPTPPPAPPSNPGSG-AVVHGGNKVA-VAAVLGGLAVLLV

XP_034809778.1 LOW QUALITY PROTEIN: basic proline-rich protein-like, partial [Pan paniscus]3.9e-0453.57Show/hide
Query:  PSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISS---PPAATPPAMPPAATPPSMESSPSPGPGPGPMPDSP-PSPPNPSPSSMPS
        PSP+P P +  P P  PPP S+PPPS+  PPSP  PP+  SPPPS  S   PP+ +PP++PP  +PPS   SP P P P P P SP P PP+P PS  P 
Subjt:  PSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISS---PPAATPPAMPPAATPPSMESSPSPGPGPGPMPDSP-PSPPNPSPSSMPS

Query:  PGPSPTPPPAPP
        P PS  PPP+PP
Subjt:  PGPSPTPPPAPP

XP_038903480.1 classical arabinogalactan protein 9-like [Benincasa hispida]3.0e-2063.91Show/hide
Query:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPA-AVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPP-AATPPSMESSPSPG
        MA+A AMLVLALS L+L +S+IAQ+PSPAP PA A APPP++PPPV+APP +         PP AASPPP+IS+PPAA PPA+PP  A+PPSMESS    
Subjt:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPA-AVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPP-AATPPSMESSPSPG

Query:  PGPGPMPDSPPSPPNPSPSSM----PSPGPSPTPPPAPPSNPGSGAVVH-GGNKVAVAAVLGGLAVLLV
        PGPGPMPDSPPSPP PSPS M    P+P P+P+PP  PP  P +G  +H GG K A AAVLGGLAV LV
Subjt:  PGPGPMPDSPPSPPNPSPSSM----PSPGPSPTPPPAPPSNPGSGAVVH-GGNKVAVAAVLGGLAVLLV

TrEMBL top hitse value%identityAlignment
A0A0A0L458 Uncharacterized protein8.4e-1359.04Show/hide
Query:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAA-VAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPP-AATPPSMESSPSPG
        MA+A AMLVL LS LSL++S+IAQ+PSP+P PA+  APPP+TPPPV APPP+         PP AASPP SIS+PPAA P A PP  A+PP ME S +P 
Subjt:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAA-VAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPP-AATPPSMESSPSPG

Query:  PGPGPMPDSPPSPPNPSPSSM--PSPGPSPTPPPAPPSNPGSGAVVHGGNKVAVAAVLGGLAVLLV
        PGP  MP+ PPSPP+ SP S   P+P P+PTPP A P + G  ++  GG    VAAVLGGLAV+LV
Subjt:  PGPGPMPDSPPSPPNPSPSSM--PSPGPSPTPPPAPPSNPGSGAVVHGGNKVAVAAVLGGLAVLLV

A0A6J1E5X6 classical arabinogalactan protein 9-like4.0e-2367.66Show/hide
Query:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAM-PPAATPPSMESSPSPGP
        MA A AMLVLALS LSLAASAIAQ+PSPAP PA  APPP TPPPV+APP +   PP  AMPP AASPPPS+S+PP A PP + PP A+PPSMES PS  P
Subjt:  MAAACAMLVLALS-LSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAM-PPAATPPSMESSPSPGP

Query:  GPGPMPDSPPSPPNPSPSSMPSPGP--SPTPPPAPPSNPGSG-AVVHGGNKVA-VAAVLGGLAVLLV
        GP  MPDSPPSPP PSP   P P P  +P+PPP+PP  PG+G ++ HGG K A VAAVLGGLA++LV
Subjt:  GPGPMPDSPPSPPNPSPSSMPSPGP--SPTPPPAPPSNPGSG-AVVHGGNKVA-VAAVLGGLAVLLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGCATGTGCCATGCTCGTGCTTGCTCTCTCTCTCTCTCTTGCAGCCTCCGCCATTGCTCAAGCTCCATCCCCCGCTCCAGTTCCCGCCGCCGTCGCCCCGCC
CCCCACAACCCCACCTCCGGTTTCAGCGCCGCCTCCCTCCGCCGCCATGCCTCCGTCGCCAGCCATGCCTCCCGCTGCAGCATCACCGCCGCCGAGTATCTCATCTCCAC
CGGCCGCGACTCCACCCGCCATGCCCCCGGCGGCTACTCCGCCGTCTATGGAATCAAGCCCAAGCCCAGGCCCAGGCCCAGGCCCAATGCCGGACAGCCCACCATCACCT
CCAAACCCAAGCCCATCATCCATGCCGTCTCCGGGGCCGTCTCCGACGCCACCACCGGCGCCGCCGTCGAATCCTGGCTCCGGAGCCGTCGTGCACGGCGGGAACAAGGT
GGCTGTTGCGGCGGTCCTGGGTGGCCTCGCAGTCCTCCTGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCCGCATGTGCCATGCTCGTGCTTGCTCTCTCTCTCTCTCTTGCAGCCTCCGCCATTGCTCAAGCTCCATCCCCCGCTCCAGTTCCCGCCGCCGTCGCCCCGCC
CCCCACAACCCCACCTCCGGTTTCAGCGCCGCCTCCCTCCGCCGCCATGCCTCCGTCGCCAGCCATGCCTCCCGCTGCAGCATCACCGCCGCCGAGTATCTCATCTCCAC
CGGCCGCGACTCCACCCGCCATGCCCCCGGCGGCTACTCCGCCGTCTATGGAATCAAGCCCAAGCCCAGGCCCAGGCCCAGGCCCAATGCCGGACAGCCCACCATCACCT
CCAAACCCAAGCCCATCATCCATGCCGTCTCCGGGGCCGTCTCCGACGCCACCACCGGCGCCGCCGTCGAATCCTGGCTCCGGAGCCGTCGTGCACGGCGGGAACAAGGT
GGCTGTTGCGGCGGTCCTGGGTGGCCTCGCAGTCCTCCTGGTTTAA
Protein sequenceShow/hide protein sequence
MAAACAMLVLALSLSLAASAIAQAPSPAPVPAAVAPPPTTPPPVSAPPPSAAMPPSPAMPPAAASPPPSISSPPAATPPAMPPAATPPSMESSPSPGPGPGPMPDSPPSP
PNPSPSSMPSPGPSPTPPPAPPSNPGSGAVVHGGNKVAVAAVLGGLAVLLV