; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028160 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028160
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold320:103096..104305
RNA-Seq ExpressionMS028160
SyntenyMS028160
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015388020.1 uncharacterized protein LOC107177951 [Citrus sinensis]1.8e-0724.19Show/hide
Query:  IRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGV--------NGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWGFRNPSKDRRRAQ
        IR  F   +A  I+++PLPR  + D+V+W  DKK  ++VKS Y L +        +  + G  S + +  +    + KK  +  ++ G     +  +R Q
Subjt:  IRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGV--------NGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWGFRNPSKDRRRAQ

Query:  IDKKWTPSR-----------PSPQYLEIEYRCN------------LVCNSNGVVVQAGNRSVK------YLEALAILDGLRNLHNLDGYNIYLEIDSLEV
        + +    S            P   + ++                 ++ NS G ++ A  +  K      Y EA A   GL          + +E DS EV
Subjt:  IDKKWTPSR-----------PSPQYLEIEYRCN------------LVCNSNGVVVQAGNRSVK------YLEALAILDGLRNLHNLDGYNIYLEIDSLEV

Query:  ANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLA
        +NL++       EI+W+V E++  M +   + ++H+ R  N  AH LA
Subjt:  ANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLA

XP_015388431.1 uncharacterized protein LOC107178124 [Citrus sinensis]1.1e-0630Show/hide
Query:  DRRRAQIDKKWTPSRPSPQYLEIEYRCN----------LVCNSNGVVVQAGNR------SVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDG
        D++   + + WTP       L ++   N          ++ N+ G VV A          V Y+EA A+  GL+   N +  ++ +E DS EVA  +N+ 
Subjt:  DRRRAQIDKKWTPSRPSPQYLEIEYRCN----------LVCNSNGVVVQAGNR------SVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDG

Query:  NDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHL
           +TEI+W+V  I+  M   + + V+HI R  NT+AH L
Subjt:  NDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHL

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]7.9e-0842.22Show/hide
Query:  RSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLAPHFEDED
        R++ YLE +AI +GLR +       I+LE DSLE  +LL+      TEI WL+ EI   M    ++S++HI REAN +AH LA    + D
Subjt:  RSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLAPHFEDED

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]5.1e-0742.42Show/hide
Query:  NGVVVQAGNR------SVKYLEALAILDGLRNLHNLDGYN-IYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLA
        +G +V AGNR      +VK LEA AIL+GLRNL NL     +++E DS EV +LLN   + +T+  W+V EI        +L+   + RE N  AH LA
Subjt:  NGVVVQAGNR------SVKYLEALAILDGLRNLHNLDGYN-IYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLA

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]6.7e-0753.19Show/hide
Query:  IRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGV
        +R  F+ +EAD I+Q PLP  + +DE+IWG+DK  +F+V+SAYHLG+
Subjt:  IRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGV

TrEMBL top hitse value%identityAlignment
A0A2N9IYC8 Reverse transcriptase domain-containing protein1.6e-0625Show/hide
Query:  MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVN--GQEAGGDSKTPVLGMFGCMEEKKAI--AMATIWGFRNPSKDRRRAQIDK
        +++ LFL  EA +I+ +PL      D ++WG  K+ ++TV+S YHL  N   Q+  G S T  +         KAI  A  T+  F       ++  +  
Subjt:  MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVN--GQEAGGDSKTPVLGMFGCMEEKKAI--AMATIWGFRNPSKDRRRAQIDK

Query:  ------KWTPSRPSPQYLEIEYRCN------------LVCNSNGVVVQAGNRSVKY------LEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGN
              KW P  P  +  ++ Y               ++ N  G V+ A ++ + Y      +EA A    ++   +L   NI LE DS  +   +    
Subjt:  ------KWTPSRPSPQYLEIEYRCN------------LVCNSNGVVVQAGNRSVKY------LEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGN

Query:  DGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLA
           T    ++ +I+        +   HI+RE N +AH LA
Subjt:  DGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLA

A0A6J1CP26 uncharacterized protein LOC1110134123.8e-0842.22Show/hide
Query:  RSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLAPHFEDED
        R++ YLE +AI +GLR +       I+LE DSLE  +LL+      TEI WL+ EI   M    ++S++HI REAN +AH LA    + D
Subjt:  RSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLAPHFEDED

A0A6J1DRA0 uncharacterized protein LOC1110224233.2e-0753.19Show/hide
Query:  IRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGV
        +R  F+ +EAD I+Q PLP  + +DE+IWG+DK  +F+V+SAYHLG+
Subjt:  IRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGV

A0A803NPU7 Uncharacterized protein3.5e-0925.65Show/hide
Query:  MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVNGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWGFRNPSKDRRRAQIDKKWTP
        ++ + FL ++ + I+Q+PL  + A+D++IW  +    +TVKS Y L  + +E        V G+       K       W    PSK +     D  W  
Subjt:  MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVNGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWGFRNPSKDRRRAQIDKKWTP

Query:  SRPSPQYLEIEYRCNLVC----------NSNGVVVQAGNRSV------KYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGE
               L  +   N V           NS+G +V A ++ V      + +EAL+++ GL+ L +   +  Y+E DSL VA  L   +  +++ + L+ +
Subjt:  SRPSPQYLEIEYRCNLVC----------NSNGVVVQAGNRSV------KYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGE

Query:  IKMFMTQKSVLSVKHIRREANTLAHHLAPH
        I   ++    + + H+ R AN+ AH LA +
Subjt:  IKMFMTQKSVLSVKHIRREANTLAHHLAPH

A0A803NVH0 Uncharacterized protein8.5e-0826.01Show/hide
Query:  MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVNGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWG--FRNPSKDRRRAQIDKKW
        ++ SLFLA++ + I+ +PL  +  ND +IW  +    +TVKS Y + ++ +E   ++    L     +++ K I   T +G   RN S +   A      
Subjt:  MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVNGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWG--FRNPSKDRRRAQIDKKW

Query:  TPSRPSPQYLEIEYRCNLVCNSNGVVVQAGNRSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVK
          S P P                      G    + +EALA++  L+ + +L     ++E DSL V N L   +  I+  + L+ +I + ++    + + 
Subjt:  TPSRPSPQYLEIEYRCNLVCNSNGVVVQAGNRSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVK

Query:  HIRREANTLAHHLAPHFEDEDGD
        H++R AN  AH LA H    D D
Subjt:  HIRREANTLAHHLAPHFEDEDGD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAGATCACTTTTTTTGGCGACAGAAGCTGACAGCATCATTCAAATGCCTCTTCCTAGATGGGAGGCAAATGATGAAGTTATTTGGGGTCTGGATAAAAAAAGTCT
TTTCACGGTGAAAAGTGCTTATCATTTGGGAGTGAATGGTCAAGAAGCAGGAGGAGACAGCAAAACACCTGTCCTGGGAATGTTCGGGTGCATGGAGGAGAAAAAGGCTA
TTGCAATGGCGACAATTTGGGGATTTCGTAATCCAAGCAAGGACCGTCGTAGAGCACAAATTGACAAAAAATGGACACCCTCTCGGCCTTCCCCACAATACCTGGAAATT
GAATACAGATGCAACCTGGTTTGTAATTCCAATGGCGTTGTGGTGCAAGCCGGCAATAGAAGTGTCAAATATTTGGAAGCCTTGGCGATTCTGGATGGGCTAAGAAATCT
TCATAATCTAGATGGGTATAATATTTACCTAGAGATAGATTCCCTTGAAGTCGCTAATCTATTGAATGATGGAAATGATGGTATCACTGAAATCTACTGGCTTGTTGGTG
AAATCAAAATGTTCATGACCCAAAAATCGGTGCTCTCCGTGAAGCATATAAGGCGAGAGGCGAACACCCTGGCGCATCATCTTGCTCCACATTTCGAGGACGAAGATGGA
GATTCTGGGGAAAATGACTCATATGACCATCTTAAGTTTCCAATGTGCTCAAATAACCCACCCCTCAAAAATTGTTTTGAATGACCCAAATCTGCTTTTTCAGAATTGTC
AGTGGAAGTAAATGTACCCAATTACCCCTCAATTATAGCGTCAATTCTCGGGCTGAAACGTGATTTTCCCGGCCGTAAGCGTGAAAATGATAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTAGATCACTTTTTTTGGCGACAGAAGCTGACAGCATCATTCAAATGCCTCTTCCTAGATGGGAGGCAAATGATGAAGTTATTTGGGGTCTGGATAAAAAAAGTCT
TTTCACGGTGAAAAGTGCTTATCATTTGGGAGTGAATGGTCAAGAAGCAGGAGGAGACAGCAAAACACCTGTCCTGGGAATGTTCGGGTGCATGGAGGAGAAAAAGGCTA
TTGCAATGGCGACAATTTGGGGATTTCGTAATCCAAGCAAGGACCGTCGTAGAGCACAAATTGACAAAAAATGGACACCCTCTCGGCCTTCCCCACAATACCTGGAAATT
GAATACAGATGCAACCTGGTTTGTAATTCCAATGGCGTTGTGGTGCAAGCCGGCAATAGAAGTGTCAAATATTTGGAAGCCTTGGCGATTCTGGATGGGCTAAGAAATCT
TCATAATCTAGATGGGTATAATATTTACCTAGAGATAGATTCCCTTGAAGTCGCTAATCTATTGAATGATGGAAATGATGGTATCACTGAAATCTACTGGCTTGTTGGTG
AAATCAAAATGTTCATGACCCAAAAATCGGTGCTCTCCGTGAAGCATATAAGGCGAGAGGCGAACACCCTGGCGCATCATCTTGCTCCACATTTCGAGGACGAAGATGGA
GATTCTGGGGAAAATGACTCATATGACCATCTTAAGTTTCCAATGTGCTCAAATAACCCACCCCTCAAAAATTGTTTTGAATGACCCAAATCTGCTTTTTCAGAATTGTC
AGTGGAAGTAAATGTACCCAATTACCCCTCAATTATAGCGTCAATTCTCGGGCTGAAACGTGATTTTCCCGGCCGTAAGCGTGAAAATGATAACTAA
Protein sequenceShow/hide protein sequence
MIRSLFLATEADSIIQMPLPRWEANDEVIWGLDKKSLFTVKSAYHLGVNGQEAGGDSKTPVLGMFGCMEEKKAIAMATIWGFRNPSKDRRRAQIDKKWTPSRPSPQYLEI
EYRCNLVCNSNGVVVQAGNRSVKYLEALAILDGLRNLHNLDGYNIYLEIDSLEVANLLNDGNDGITEIYWLVGEIKMFMTQKSVLSVKHIRREANTLAHHLAPHFEDEDG
DSGENDSYDHLKFPMCSNNPPLKNCFEUPKSAFSELSVEVNVPNYPSIIASILGLKRDFPGRKRENDN