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MS028161 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028161
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome locationscaffold320:120738..127452
RNA-Seq ExpressionMS028161
SyntenyMS028161
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022148915.1 uncharacterized protein LOC111017466 [Momordica charantia]1.5e-0872.09Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
        SP + LQTLI AY EPVYPL DEDDW+LPDDFV  +VESP+ V
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
XP_022149027.1 uncharacterized protein LOC111017546 [Momordica charantia]5.0e-0765.12Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
        SP + L+TLITAY EP+YPLEDEDDWVLP+ FV   +E PK +
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
XP_022150312.1 uncharacterized protein LOC111018510 [Momordica charantia]3.8e-0768.75Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
        SP + LQTLITAY E VYP  D DDW+LPDDFV V VE  KIV  HVG
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
XP_022151607.1 uncharacterized protein LOC111019519 [Momordica charantia]5.0e-0765.12Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
        SP + LQTLI AY EPVYPL D++DW++PDDFV  +VE PK V
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
XP_022156964.1 uncharacterized protein LOC111023792 [Momordica charantia]2.9e-0766.67Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
        SP + LQTLI AYVEPV PL DE+DW+LPDDFV ++VE PK    HVG
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
TrEMBL top hitse value%identityAlignment
A0A6J1D499 uncharacterized protein LOC1110174667.5e-0972.09Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
        SP + LQTLI AY EPVYPL DEDDW+LPDDFV  +VESP+ V
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
A0A6J1D6P7 uncharacterized protein LOC1110175462.4e-0765.12Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
        SP + L+TLITAY EP+YPLEDEDDWVLP+ FV   +E PK +
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
A0A6J1DAE4 uncharacterized protein LOC1110185101.8e-0768.75Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
        SP + LQTLITAY E VYP  D DDW+LPDDFV V VE  KIV  HVG
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
A0A6J1DDZ3 uncharacterized protein LOC1110195192.4e-0765.12Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
        SP + LQTLI AY EPVYPL D++DW++PDDFV  +VE PK V
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIV
A0A6J1DV50 uncharacterized protein LOC1110237921.4e-0766.67Show/hide
Query:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
        SP + LQTLI AYVEPV PL DE+DW+LPDDFV ++VE PK    HVG
Subjt:  SPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAATCCTGGTCCGGATTTGTGCTATCCCAGATCGGGATCCACACCAGTCCAGTTTTTATCCTTCAAACTCTAATTACCGCATATGTCGAACCTGTGTACCCTCTCGA
GGATGAAGATGATTGGGTCCTACCTGATGACTTCGTCTACGTCAGAGTCGAGTCGCCCAAAATTGTTAACGGGCACGTCGGGTTGTACGGGCTTCTAACAGGTGAGGGTG
ACCACCTCCGACAGCAGGTGGGTGCCGCCTCTGTCTGCAAGTTTGTCCCCCTCCAGCTGCAGGTTGCGGGCTGCAGTCCTCAACGTTCCTCCTGTACAGCTCTGCTGGTG
ACACGCCCATACGCACGCTCAGTGTATGCTCCTAACCTCATGTGGTTCCATGCCTCGTTGGCACCCCCAACGCTCAACAAGTGGCCTGCTCGAATTTCACCCCCAACAGT
TAGCCTTCTTTTAGATCCAGATCGTCTCGCTCGGGATGGCCGGGAGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAATCCTGGTCCGGATTTGTGCTATCCCAGATCGGGATCCACACCAGTCCAGTTTTTATCCTTCAAACTCTAATTACCGCATATGTCGAACCTGTGTACCCTCTCGA
GGATGAAGATGATTGGGTCCTACCTGATGACTTCGTCTACGTCAGAGTCGAGTCGCCCAAAATTGTTAACGGGCACGTCGGGTTGTACGGGCTTCTAACAGGTGAGGGTG
ACCACCTCCGACAGCAGGTGGGTGCCGCCTCTGTCTGCAAGTTTGTCCCCCTCCAGCTGCAGGTTGCGGGCTGCAGTCCTCAACGTTCCTCCTGTACAGCTCTGCTGGTG
ACACGCCCATACGCACGCTCAGTGTATGCTCCTAACCTCATGTGGTTCCATGCCTCGTTGGCACCCCCAACGCTCAACAAGTGGCCTGCTCGAATTTCACCCCCAACAGT
TAGCCTTCTTTTAGATCCAGATCGTCTCGCTCGGGATGGCCGGGAGCGTTGA
Protein sequenceShow/hide protein sequence
MQSWSGFVLSQIGIHTSPVFILQTLITAYVEPVYPLEDEDDWVLPDDFVYVRVESPKIVNGHVGLYGLLTGEGDHLRQQVGAASVCKFVPLQLQVAGCSPQRSSCTALLV
TRPYARSVYAPNLMWFHASLAPPTLNKWPARISPPTVSLLLDPDRLARDGRER