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MS028203 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028203
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionfibrous sheath CABYR-binding protein
Genome locationscaffold1:570345..570878
RNA-Seq ExpressionMS028203
SyntenyMS028203
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_179243683.1 MULTISPECIES: filamentous hemagglutinin N-terminal domain-containing protein [unclassified Burkholderia]5.0e-0540.69Show/hide
Query:  PPQ--TPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPPPSTLEIEEVNLPPHHPLPP---TPSE--TPPTHTSEIEEVDPSPRASPPAEIPPP--
        PP+  TP EEV PP    PP   T  EEV PP  ++ P E  PP  +   E   PP    PP   TP E  TPP   +  EEV P    +PP E+ PP  
Subjt:  PPQ--TPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPPPSTLEIEEVNLPPHHPLPP---TPSE--TPPTHTSEIEEVDPSPRASPPAEIPPP--

Query:  ISEIEGVDPPPRVSPPPEIPTP----TPEEVDPPQSA---QEITP
        ++  E V PP  V+PP E+  P     PEEV PP+     +E+TP
Subjt:  ISEIEGVDPPPRVSPPPEIPTP----TPEEVDPPQSA---QEITP
XP_023787365.1 proteoglycan 4 isoform X1 [Cyanistes caeruleus]1.9e-0438.12Show/hide
Query:  PPPQTPAEEVDPPSRGRPPPSETFTEE-VDPPPRLSTPSE--TP-PPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEI
        P    P E   PP    PPP ET  EE   PPP   TP E  TP P  T    E   PP    PP    TPP   +  EE  P P  + P E  PP  E 
Subjt:  PPPQTPAEEVDPPSRGRPPPSETFTEE-VDPPPRLSTPSE--TP-PPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEI

Query:  ----EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
            E   PPP  + P E+ TPTPEE  P Q     TPT  E+  E P   + +ET +++
Subjt:  ----EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
XP_023787366.1 proteoglycan 4 isoform X2 [Cyanistes caeruleus]1.5e-0439.18Show/hide
Query:  PPPQTPAEEVDP-PSRGRPPPSETFTEE-VDPPPRLSTP---SETPPPSTLEIEEVNLP------PHHPLPPTPSET--PPTHTSEIEEVDPSPRAS--P
        P   TP E   P P    PPP ET  EE   PPP  +TP     TPPP     EE   P      P  P  PTP ET  PP  T+  EE  P P  +  P
Subjt:  PPPQTPAEEVDP-PSRGRPPPSETFTEE-VDPPPRLSTP---SETPPPSTLEIEEVNLP------PHHPLPPTPSET--PPTHTSEIEEVDPSPRAS--P

Query:  PAEIPPPISEI----EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
        P E  PP  E     E   PPP  + P E+ TPTPEE  P Q     TPT  E+  E P   + +ET +++
Subjt:  PAEIPPPISEI----EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
XP_023787369.1 proteoglycan 4 isoform X4 [Cyanistes caeruleus]1.9e-0438.12Show/hide
Query:  PPPQTPAEEVDPPSRGRPPPSETFTEE-VDPPPRLSTPSE--TP-PPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEI
        P    P E   PP    PPP ET  EE   PPP   TP E  TP P  T    E   PP    PP    TPP   +  EE  P P  + P E  PP  E 
Subjt:  PPPQTPAEEVDPPSRGRPPPSETFTEE-VDPPPRLSTPSE--TP-PPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEI

Query:  ----EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
            E   PPP  + P E+ TPTPEE  P Q     TPT  E+  E P   + +ET +++
Subjt:  ----EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
XP_023787372.1 proteoglycan 4 isoform X7 [Cyanistes caeruleus]6.6e-0539.87Show/hide
Query:  PPQTPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPP--PSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEIEGV
        PP TP     PP    PPP ET  EE  PP    TP ET P  P+T   EE   PP    PP    TP   T   EE  P     PP E  PP  E    
Subjt:  PPQTPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPP--PSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEIEGV

Query:  DPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
         PPP  + P E+ TPTPEE  P Q     TPT  E+  E P   + +ET +++
Subjt:  DPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQ
TrEMBL top hitse value%identityAlignment
A0A6I9LZ68 fibrous sheath CABYR-binding protein4.6e-0440.48Show/hide
Query:  PPPQT---PAEEVDPPSRGR-------PPPSETFTEEVDPPPRLSTPSETPPPSTLE--IEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPA-
        PPP T   PAEEV PP           PPP+E    EV PPP    P E PPP T E   EEV  PP    P   ++ PP   + +EEV P P    PA 
Subjt:  PPPQT---PAEEVDPPSRGR-------PPPSETFTEEVDPPPRLSTPSETPPPSTLE--IEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPA-

Query:  EIPPPISE---IEGVDPPPRVSPPPEIPTPTP------EEVDPPQS----AQEITPTVGESA--QETP
        E+PPP +E    E V PPP    P E   P P      EEV PP +    A+E+ P   E A  +E P
Subjt:  EIPPPISE---IEGVDPPPRVSPPPEIPTPTP------EEVDPPQS----AQEITPTVGESA--QETP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G19430.1 late embryogenesis abundant protein-related / LEA protein-related4.5e-0438.93Show/hide
Query:  PPPQTPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPPPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEIEGVD
        PPP TP+     P    PPP+ T      P P +S P  TP PS         PP  P PPTP+ + P+ T  +    P+P  S P+   PP+       
Subjt:  PPPQTPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPPPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEIEGVD

Query:  PPPRVSPPPEIPTPTPEEVDPPQSAQEITPT
        PPP VSPPP  PTPTP    PP    ++TPT
Subjt:  PPPRVSPPPEIPTPTPEEVDPPQSAQEITPT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCAACGTATTATAAAAACATTGATCCGACGTCGACGTCCTCCTCCTCAAACTCCTGCTGAGGAAGTTGATCCACCTTCACGTGGACGTCCTCCTCCGAGTGAAAC
TTTTACGGAGGAAGTTGATCCACCTCCACGACTTTCGACTCCGAGTGAAACTCCTCCTCCTAGTACTTTAGAGATTGAGGAAGTTAACCTACCTCCACATCATCCTCTTC
CTCCGACTCCGAGTGAAACCCCTCCTACACATACTTCGGAGATTGAGGAAGTTGATCCATCTCCACGTGCTTCTCCTCCAGCTGAAATTCCTCCTCCTATTTCGGAGATT
GAGGGAGTTGATCCACCTCCACGTGTTTCTCCTCCGCCCGAAATTCCTACTCCTACACCTGAGGAAGTTGATCCACCTCAGTCCGCTCAAGAAATTACTCCTACTGTTGG
CGAGTCTGCTCAGGAAACTCCTCATGCTGGCGAGTCGCAGGAAACTGCTACTGATCAACTTTCTGAGATTATAATAGAAAAAGGAGAGAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGATCCAACGTATTATAAAAACATTGATCCGACGTCGACGTCCTCCTCCTCAAACTCCTGCTGAGGAAGTTGATCCACCTTCACGTGGACGTCCTCCTCCGAGTGAAAC
TTTTACGGAGGAAGTTGATCCACCTCCACGACTTTCGACTCCGAGTGAAACTCCTCCTCCTAGTACTTTAGAGATTGAGGAAGTTAACCTACCTCCACATCATCCTCTTC
CTCCGACTCCGAGTGAAACCCCTCCTACACATACTTCGGAGATTGAGGAAGTTGATCCATCTCCACGTGCTTCTCCTCCAGCTGAAATTCCTCCTCCTATTTCGGAGATT
GAGGGAGTTGATCCACCTCCACGTGTTTCTCCTCCGCCCGAAATTCCTACTCCTACACCTGAGGAAGTTGATCCACCTCAGTCCGCTCAAGAAATTACTCCTACTGTTGG
CGAGTCTGCTCAGGAAACTCCTCATGCTGGCGAGTCGCAGGAAACTGCTACTGATCAACTTTCTGAGATTATAATAGAAAAAGGAGAGAGATAA
Protein sequenceShow/hide protein sequence
MIQRIIKTLIRRRRPPPQTPAEEVDPPSRGRPPPSETFTEEVDPPPRLSTPSETPPPSTLEIEEVNLPPHHPLPPTPSETPPTHTSEIEEVDPSPRASPPAEIPPPISEI
EGVDPPPRVSPPPEIPTPTPEEVDPPQSAQEITPTVGESAQETPHAGESQETATDQLSEIIIEKGER