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MS028240 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028240
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-binding protein HEXBP
Genome locationscaffold47:938166..938624
RNA-Seq ExpressionMS028240
SyntenyMS028240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACN35989.1 unknown [Zea mays]5.7e-0535.21Show/hide
Query:  MAKLLAVPAHNVPITTTAAATHTATATANA----PVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQP
        MA L+A PA +V   TT    +T   +AN        P+ + +    L+G +   I QVAN +I  I   MA LPAIVAGLL+      M  L+A+ A+ 
Subjt:  MAKLLAVPAHNVPITTTAAATHTATATANA----PVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQP

Query:  QVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP
                S A    MS L T  A  FI  A+ HV     +P
Subjt:  QVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP

CAN63952.1 hypothetical protein VITISV_020990 [Vitis vinifera]2.1e-3152.03Show/hide
Query:  QGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIA
        QG HAIPAHM  L+A PA N+  T+ A            P  P+++++G W L  HMP Y+ QVANW I T+   +A LPA++A L++ TVSC MTLL+A
Subjt:  QGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIA

Query:  IIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIPT
        +IAQPQVPRWQ RS A    M+ L   +AD+ IGT   HVTWFSTIPT
Subjt:  IIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIPT

TrEMBL top hitse value%identityAlignment
A0A0A9A5G9 DNA-binding protein HEXBP1.4e-0934.62Show/hide
Query:  MADHQGA-HAIPAHMAKLLAVPAHNVPITTTAAATHTA----TATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTV
        +ADH+GA HA+ AHMA L+A PA ++ + T   +T T     TAT      P+ + + F  L+G M   I Q+AN +I  I   MA LP +VAGLL+   
Subjt:  MADHQGA-HAIPAHMAKLLAVPAHNVPITTTAAATHTA----TATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTV

Query:  SCYMTLLIAIIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP
           +   +A+ A+    R   RS A    ++ + T V   F+   I   T  S +P
Subjt:  SCYMTLLIAIIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP

A5BX74 Uncharacterized protein1.0e-3152.03Show/hide
Query:  QGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIA
        QG HAIPAHM  L+A PA N+  T+ A            P  P+++++G W L  HMP Y+ QVANW I T+   +A LPA++A L++ TVSC MTLL+A
Subjt:  QGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIA

Query:  IIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIPT
        +IAQPQVPRWQ RS A    M+ L   +AD+ IGT   HVTWFSTIPT
Subjt:  IIAQPQVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIPT

C0PLC3 Uncharacterized protein2.7e-0535.21Show/hide
Query:  MAKLLAVPAHNVPITTTAAATHTATATANA----PVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQP
        MA L+A PA +V   TT    +T   +AN        P+ + +    L+G +   I QVAN +I  I   MA LPAIVAGLL+      M  L+A+ A+ 
Subjt:  MAKLLAVPAHNVPITTTAAATHTATATANA----PVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQP

Query:  QVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP
                S A    MS L T  A  FI  A+ HV     +P
Subjt:  QVPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGATCATCAAGGGGCCCATGCAATCCCTGCTCATATGGCCAAGCTGCTGGCAGTTCCTGCACACAACGTCCCGATAACCACCACCGCTGCCGCCACGCACACTGC
CACCGCCACTGCCAATGCCCCGGTCTACCCGGTCACTGAGGATGTTGGATTTTGGACACTGTCTGGCCACATGCCCGGATACATTACACAAGTTGCAAATTGGGTCATTT
GGACAATCGCGAGCAAGATGGCCTGTCTTCCTGCAATTGTTGCAGGCCTTCTCGTTAGTACAGTCAGCTGCTATATGACCCTGCTTATAGCAATTATTGCACAGCCTCAA
GTCCCCCGGTGGCAGCGGAGGAGCGGTGCATTCCCTAGCCCGATGTCCTGCCTTACCACAGGTGTGGCAGATGCCTTCATTGGGACAGCTATTTGCCATGTGACCTGGTT
CTCGACAATTCCAACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGATCATCAAGGGGCCCATGCAATCCCTGCTCATATGGCCAAGCTGCTGGCAGTTCCTGCACACAACGTCCCGATAACCACCACCGCTGCCGCCACGCACACTGC
CACCGCCACTGCCAATGCCCCGGTCTACCCGGTCACTGAGGATGTTGGATTTTGGACACTGTCTGGCCACATGCCCGGATACATTACACAAGTTGCAAATTGGGTCATTT
GGACAATCGCGAGCAAGATGGCCTGTCTTCCTGCAATTGTTGCAGGCCTTCTCGTTAGTACAGTCAGCTGCTATATGACCCTGCTTATAGCAATTATTGCACAGCCTCAA
GTCCCCCGGTGGCAGCGGAGGAGCGGTGCATTCCCTAGCCCGATGTCCTGCCTTACCACAGGTGTGGCAGATGCCTTCATTGGGACAGCTATTTGCCATGTGACCTGGTT
CTCGACAATTCCAACATAG
Protein sequenceShow/hide protein sequence
MADHQGAHAIPAHMAKLLAVPAHNVPITTTAAATHTATATANAPVYPVTEDVGFWTLSGHMPGYITQVANWVIWTIASKMACLPAIVAGLLVSTVSCYMTLLIAIIAQPQ
VPRWQRRSGAFPSPMSCLTTGVADAFIGTAICHVTWFSTIPT