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MS028241 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028241
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I P700 chlorophyll a apoprotein A1
Genome locationscaffold47:948315..948617
RNA-Seq ExpressionMS028241
SyntenyMS028241
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009522 - photosystem I (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2089976.1 hypothetical protein ES319_A03G096000v1, partial [Gossypium barbadense]7.4e-3082.93Show/hide
Query:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA
        R LLLTCYI AFLH SARSS+PASPFPLSPF   K G MEYSQVVRHQF VP CKG NPFTPDYEHPIGSVK ELTTTGE A
Subjt:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA

KAG2247429.1 hypothetical protein Bca52824_087057 [Brassica carinata]9.1e-2063.64Show/hide
Query:  VVVGQQERILLLTCYILAFLHDSARSSSPASPFPLSPFYRPK-QGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGE
        ++VG +E   LL  +  + +  +     PASPFPL P YRPK +G MEYSQVVRH+FLVP CKG NPFTPDYEHPIGSVK ELTTTGE
Subjt:  VVVGQQERILLLTCYILAFLHDSARSSSPASPFPLSPFYRPK-QGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGE

KAG2308121.1 hypothetical protein Bca52824_027869 [Brassica carinata]9.1e-2063.64Show/hide
Query:  VVVGQQERILLLTCYILAFLHDSARSSSPASPFPLSPFYRPK-QGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGE
        ++VG +E   LL  +  + +  +     PASPFPL P YRPK +G MEYSQVVRH+FLVP CKG NPFTPDYEHPIGSVK ELTTTGE
Subjt:  VVVGQQERILLLTCYILAFLHDSARSSSPASPFPLSPFYRPK-QGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGE

KJB09807.1 hypothetical protein B456_001G168300, partial [Gossypium raimondii]3.6e-3284.52Show/hide
Query:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADC
        R LLLTCYI AFLH SARSSSPASPFPLSPF   K G MEYSQVVRH+FLVP CKG NPFTPDYEHPIGSVK ELTTTGE ADC
Subjt:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADC

TYH24629.1 hypothetical protein ES288_A03G106700v1 [Gossypium darwinii]4.4e-3082.93Show/hide
Query:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA
        R LLLTCYI AFLH SARSS+PASPFPLSPF   K G MEYSQVVRHQF VP CKG NPFTPDYEHPIGSVK ELTTTGE A
Subjt:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA

TrEMBL top hitse value%identityAlignment
A0A0D2LZI2 Uncharacterized protein (Fragment)1.7e-3284.52Show/hide
Query:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADC
        R LLLTCYI AFLH SARSSSPASPFPLSPF   K G MEYSQVVRH+FLVP CKG NPFTPDYEHPIGSVK ELTTTGE ADC
Subjt:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADC

A0A5D2H581 Uncharacterized protein2.1e-3082.93Show/hide
Query:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA
        R LLLTCYI AFLH SARSS+PASPFPLSPF   K G MEYSQVVRHQF VP CKG NPFTPDYEHPIGSVK ELTTTGE A
Subjt:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA

A0A5J5WF54 Uncharacterized protein (Fragment)3.6e-3082.93Show/hide
Query:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA
        R LLLTCYI AFLH SARSS+PASPFPLSPF   K G MEYSQVVRHQF VP CKG NPFTPDYEHPIGSVK ELTTTGE A
Subjt:  RILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETA

A5BTN0 Uncharacterized protein2.2e-1979.03Show/hide
Query:  PFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADCSP
        PFP+ P    K G MEYSQVVRH+FLVP CKG NPFTPDYEHPIGSVK ELTTTGE ADCSP
Subjt:  PFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADCSP

R4I232 Uncharacterized protein4.1e-1869.23Show/hide
Query:  LLTCYILAFLHDSARSSSPASPFPLSPFYRPK-QGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGE
        LL   +LA+L        PA PFPL P YRPK +G MEYSQVVRH+FLVP CKG NPFTPDYEHPIGSVK ELTT GE
Subjt:  LLTCYILAFLHDSARSSSPASPFPLSPFYRPK-QGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTTCCCTCGCGAGCTTGTTGTAGTCGGTCAACAAGAGAGAATCTTGCTGCTTACTTGTTATATCCTCGCGTTCTTGCACGACTCGGCTCGTTCTTCGAGCCCGGC
TTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGTCATATGGAGTATAGCCAAGTGGTAAGGCATCAGTTTTTGGTACCAACATGCAAAGGTCCGAATCCTT
TTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGACCGAGCTGACGACTACAGGGGAAACGGCTGACTGCAGTCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGTTCCCTCGCGAGCTTGTTGTAGTCGGTCAACAAGAGAGAATCTTGCTGCTTACTTGTTATATCCTCGCGTTCTTGCACGACTCGGCTCGTTCTTCGAGCCCGGC
TTCTCCCTTCCCCCTCTCCCCGTTCTACCGTCCAAAACAAGGTCATATGGAGTATAGCCAAGTGGTAAGGCATCAGTTTTTGGTACCAACATGCAAAGGTCCGAATCCTT
TTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGACCGAGCTGACGACTACAGGGGAAACGGCTGACTGCAGTCCCTGA
Protein sequenceShow/hide protein sequence
MWFPRELVVVGQQERILLLTCYILAFLHDSARSSSPASPFPLSPFYRPKQGHMEYSQVVRHQFLVPTCKGPNPFTPDYEHPIGSVKTELTTTGETADCSP