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MS028245 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028245
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR21-like
Genome locationscaffold47:1082438..1082692
RNA-Seq ExpressionMS028245
SyntenyMS028245
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2335211.1 hypothetical protein Bca52824_006391 [Brassica carinata]3.6e-2576.39Show/hide
Query:  RKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        RK++S  PKGF AVYVGE+QK+R+V+PIS+L  PSFQDLLSK+EEEFGFDHPMGGLTIPC ED+F  VTSRL
Subjt:  RKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

XP_008448012.1 PREDICTED: auxin-responsive protein SAUR21-like [Cucumis melo]2.8e-3895.18Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN
        MGFRLINSPRKSSSTVPKGF AVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVF +VTSRLAN
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN

XP_011658572.1 auxin-responsive protein SAUR21 [Cucumis sativus]1.9e-3997.59Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN
        MGFRLINSPRKSSSTVPKGF AVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN

XP_022135747.1 auxin-responsive protein SAUR21-like [Momordica charantia]4.6e-41100Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS
        MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS

XP_022952260.1 auxin-responsive protein SAUR21-like [Cucurbita moschata]1.9e-3998.78Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA
        MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA

TrEMBL top hitse value%identityAlignment
A0A0A0K4I7 Uncharacterized protein9.4e-4097.59Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN
        MGFRLINSPRKSSSTVPKGF AVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN

A0A5D3CP52 Auxin-responsive protein SAUR21-like1.4e-3895.18Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN
        MGFRLINSPRKSSSTVPKGF AVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVF +VTSRLAN
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLAN

A0A6J1C3M2 auxin-responsive protein SAUR21-like2.2e-41100Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS
        MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS

A0A6J1GL96 auxin-responsive protein SAUR21-like9.4e-4098.78Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA
        MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA

A0A6J1HY12 auxin-responsive protein SAUR21-like9.4e-4098.78Show/hide
Query:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA
        MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPIS+LKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA
Subjt:  MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLA

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR236.3e-2564.1Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        ++++    + S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSRL
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

Q9FJF7 Auxin-responsive protein SAUR223.7e-2562.82Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        ++++    + S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+E+EFGFDHPMGGLTIPC+ED F  VTSRL
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

Q9FJF9 Auxin-responsive protein SAUR211.3e-2570.83Show/hide
Query:  RKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        R ++S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSRL
Subjt:  RKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

Q9FJG0 Auxin-responsive protein SAUR202.8e-2564.94Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSR
        ++++    ++S  PKGF AVYVGE+QK+R+++PIS+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSR
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSR

Q9FK62 Auxin-responsive protein SAUR242.2e-2564.1Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        ++++    + S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSRL
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

Arabidopsis top hitse value%identityAlignment
AT5G18020.1 SAUR-like auxin-responsive protein family2.0e-2664.94Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSR
        ++++    ++S  PKGF AVYVGE+QK+R+++PIS+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSR
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSR

AT5G18030.1 SAUR-like auxin-responsive protein family9.0e-2770.83Show/hide
Query:  RKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        R ++S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSRL
Subjt:  RKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

AT5G18050.1 SAUR-like auxin-responsive protein family2.6e-2662.82Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        ++++    + S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+E+EFGFDHPMGGLTIPC+ED F  VTSRL
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

AT5G18060.1 SAUR-like auxin-responsive protein family4.5e-2664.1Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        ++++    + S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSRL
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL

AT5G18080.1 SAUR-like auxin-responsive protein family1.5e-2664.1Show/hide
Query:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL
        ++++    + S  PKGF AVYVGE+QK+R+++P+S+L  PSFQ LLSK+EEEFGFDHPMGGLTIPC ED F  VTSRL
Subjt:  RLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCCGTTTGATAAACAGCCCAAGGAAATCGTCGTCGACTGTTCCAAAGGGGTTTTTCGCAGTCTACGTTGGAGAAACCCAGAAGAGACGACATGTGATTCCGAT
ATCTTTCTTGAAGCATCCGTCGTTTCAAGATCTGTTGAGTAAAGCCGAAGAAGAGTTCGGATTCGATCATCCAATGGGGGGCTTGACGATCCCTTGCAACGAAGATGTGT
TCTTCGAAGTCACTTCTCGCTTGGCGAATTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCCGTTTGATAAACAGCCCAAGGAAATCGTCGTCGACTGTTCCAAAGGGGTTTTTCGCAGTCTACGTTGGAGAAACCCAGAAGAGACGACATGTGATTCCGAT
ATCTTTCTTGAAGCATCCGTCGTTTCAAGATCTGTTGAGTAAAGCCGAAGAAGAGTTCGGATTCGATCATCCAATGGGGGGCTTGACGATCCCTTGCAACGAAGATGTGT
TCTTCGAAGTCACTTCTCGCTTGGCGAATTCTTGA
Protein sequenceShow/hide protein sequence
MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISFLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANS