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MS028247 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028247
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationscaffold47:1086585..1086887
RNA-Seq ExpressionMS028247
SyntenyMS028247
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135742.1 indole-3-acetic acid-induced protein ARG7-like [Momordica charantia]1.3e-50100Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD
        MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD

XP_022135743.1 auxin-induced protein 15A-like [Momordica charantia]2.6e-4390.53Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLP IVHAKQSLRRS+STGNGASPKAVD+PKGYFTVY+GE QKKRFVIPLSYLN+P FQDLL QAEEEFGYDHPMGGITIPCSEDTFL+LTQ
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

XP_022989148.1 auxin-induced protein 15A-like [Cucurbita maxima]5.0e-4287.37Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLP IVHA+QSL+RS+STGNGASPKAVD+PKGYFTVY+GE +K+RFVIPLSYLNQP FQDLLSQAEEEFGYDHPMGGITIPCSE+TFL+LTQ
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

XP_038887254.1 auxin-induced protein 15A-like [Benincasa hispida]3.8e-4289.47Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLP IV AKQSL+RS+STGNGASPKAVD+PKGYFTVY+GEEQKKRFVIPLSYLNQP FQDLLSQAEEEFGY+HPMGGITIPCSE+ FLNLTQ
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

XP_038887257.1 auxin-induced protein 15A-like [Benincasa hispida]6.5e-4288.42Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLPSIVHAKQS RRS+STGNGASPKA+D+PKGYFTVY+GE QKKRFVIPLS LNQP FQDLLSQAEEEFGYDHPMGGITIPCSE+ FL+LTQ
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

TrEMBL top hitse value%identityAlignment
A0A6J1C1L6 auxin-induced protein 15A-like7.0e-4285.26Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLPSI+HAK SLRRST++GNGASPK++D+PKGYFTVY+GE QKKRFVIPLSYLNQP FQDLLSQAEEEFGYDHPMGGITIPC+ED F+NLT+
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

A0A6J1C1X1 auxin-induced protein 15A-like4.1e-4290.43Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT
        MGFRLPSIVHAKQSLRRS STGNGASP+A D PKGYFTVY GE QKKRFVIPLSYLNQPLFQDLLSQAEEEFGY+HPMGGITIPCSE+ FLNLT
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT

A0A6J1C3L5 indole-3-acetic acid-induced protein ARG7-like6.3e-51100Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD
        MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD

A0A6J1C5R3 auxin-induced protein 15A-like1.3e-4390.53Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLP IVHAKQSLRRS+STGNGASPKAVD+PKGYFTVY+GE QKKRFVIPLSYLN+P FQDLL QAEEEFGYDHPMGGITIPCSEDTFL+LTQ
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

A0A6J1JPE8 auxin-induced protein 15A-like2.4e-4287.37Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ
        MGFRLP IVHA+QSL+RS+STGNGASPKAVD+PKGYFTVY+GE +K+RFVIPLSYLNQP FQDLLSQAEEEFGYDHPMGGITIPCSE+TFL+LTQ
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQ

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG75.0e-2967.02Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT
        MGFRLP I       R++ S  N AS K +D PKGY  VY+GE   KRFVIP+S+LNQPLFQDLLSQAEEEFGYDHPMGG+TIPCSED F ++T
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT

P33080 Auxin-induced protein X10A7.2e-2861.7Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT
        MGFRLP I       R+++   N AS K+V++PKGY  VY+G++  +RF+IP+SYLNQP FQDLL+QAEEEFGYDHPMGG+TIPC ED FL +T
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT

P33083 Auxin-induced protein 6B6.1e-2762.77Show/hide
Query:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT
        MGFRLP I       R+++ + N AS KAVD+ KGY  VY+GE+  +RFVIP+SYLN+P FQDLLSQAEEEFGY HP GG+TIPCSED F ++T
Subjt:  MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLT

Q9FJG0 Auxin-responsive protein SAUR203.0e-2658.06Show/hide
Query:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQR
        S++ AK+ L RST+  + A       PKG+  VY+GE QKKR+++P+SYLNQP FQ LLS++EEEFG+DHPMGG+TIPC EDTF+N+T   QR
Subjt:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQR

Q9FK62 Auxin-responsive protein SAUR245.2e-2658.7Show/hide
Query:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ
        S++ AK+ L RST  G+ A       PKG+  VY+GE QKKR+++P+SYLNQP FQ LLS++EEEFG+DHPMGG+TIPC EDTF+N+T   Q
Subjt:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ

Arabidopsis top hitse value%identityAlignment
AT4G38840.1 SAUR-like auxin-responsive protein family3.3e-2855.32Show/hide
Query:  MGFRLPSIVH-AKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNL
        M  R+P ++  +KQ LR++    + +S  ++D+PKGY  VY+GE+  KRFV+P+SYL+QP FQDLL +AEEEFG+DHPMGG+TIPCSE+ F++L
Subjt:  MGFRLPSIVH-AKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNL

AT5G18010.1 SAUR-like auxin-responsive protein family4.1e-2657.61Show/hide
Query:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ
        S++ AK+ L RST+ G+ A       PKG+  VY+GE QKKR+++PLSYL+QP FQ LLS++EEEFG+ HPMGG+TIPC EDTF+N+T   Q
Subjt:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ

AT5G18020.1 SAUR-like auxin-responsive protein family2.2e-2758.06Show/hide
Query:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQR
        S++ AK+ L RST+  + A       PKG+  VY+GE QKKR+++P+SYLNQP FQ LLS++EEEFG+DHPMGG+TIPC EDTF+N+T   QR
Subjt:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQR

AT5G18050.1 SAUR-like auxin-responsive protein family3.1e-2657.61Show/hide
Query:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ
        S++ AK+ L RST+  + A       PKG+  VY+GE QKKR+++PLSYLNQP FQ LLS++E+EFG+DHPMGG+TIPC EDTF+N+T   Q
Subjt:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ

AT5G18080.1 SAUR-like auxin-responsive protein family3.7e-2758.7Show/hide
Query:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ
        S++ AK+ L RST  G+ A       PKG+  VY+GE QKKR+++P+SYLNQP FQ LLS++EEEFG+DHPMGG+TIPC EDTF+N+T   Q
Subjt:  SIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCCGTTTGCCTAGTATTGTTCATGCTAAGCAAAGTCTTCGACGTTCTACGTCAACAGGAAATGGAGCATCTCCAAAAGCTGTAGACATTCCAAAAGGCTACTT
CACAGTTTATATTGGCGAGGAACAAAAGAAGCGTTTCGTCATCCCGCTATCTTACTTGAATCAGCCTTTATTTCAAGATCTGTTGAGTCAAGCAGAAGAAGAATTTGGAT
ATGATCATCCAATGGGTGGCATCACAATTCCATGTAGTGAAGATACTTTTCTCAATCTCACTCAGATGAACCAGAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCCGTTTGCCTAGTATTGTTCATGCTAAGCAAAGTCTTCGACGTTCTACGTCAACAGGAAATGGAGCATCTCCAAAAGCTGTAGACATTCCAAAAGGCTACTT
CACAGTTTATATTGGCGAGGAACAAAAGAAGCGTTTCGTCATCCCGCTATCTTACTTGAATCAGCCTTTATTTCAAGATCTGTTGAGTCAAGCAGAAGAAGAATTTGGAT
ATGATCATCCAATGGGTGGCATCACAATTCCATGTAGTGAAGATACTTTTCTCAATCTCACTCAGATGAACCAGAGGGATTGA
Protein sequenceShow/hide protein sequence
MGFRLPSIVHAKQSLRRSTSTGNGASPKAVDIPKGYFTVYIGEEQKKRFVIPLSYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDTFLNLTQMNQRD