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MS028249 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028249
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-induced protein 15A-like
Genome locationscaffold47:1093558..1093860
RNA-Seq ExpressionMS028249
SyntenyMS028249
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135743.1 auxin-induced protein 15A-like [Momordica charantia]2.9e-4287Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIVHAKQSLRRSSS GNG+ PKAVDVPKGYFTVYVG VQKKRFVIPL+YLNEPSFQDLL QAEEEFGY+HPMGGITIPCSED  L+L+QSL++S
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

XP_022952255.1 auxin-induced protein X10A-like [Cucurbita moschata]2.1e-4084Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIV  KQSL+RSSS GNG+ PKAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGITIPCSED  L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

XP_022952257.1 auxin-induced protein 15A-like [Cucurbita moschata]1.2e-4084Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIV  KQSL+RSSS GNG+ PKAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGITIPCSED+ L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

XP_022969518.1 auxin-induced protein X10A-like [Cucurbita maxima]2.7e-4083Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIVHAK+SL+RSSS GNG+  KAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGIT+PCSED  L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

XP_023553777.1 auxin-induced protein X10A-like [Cucurbita pepo subsp. pepo]1.6e-4084Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIV  KQSL+RSSS GNG+ PKAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGITIPCSED  L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

TrEMBL top hitse value%identityAlignment
A0A6J1C5R3 auxin-induced protein 15A-like1.4e-4287Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIVHAKQSLRRSSS GNG+ PKAVDVPKGYFTVYVG VQKKRFVIPL+YLNEPSFQDLL QAEEEFGY+HPMGGITIPCSED  L+L+QSL++S
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

A0A6J1GJW5 auxin-induced protein 15A-like5.9e-4184Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIV  KQSL+RSSS GNG+ PKAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGITIPCSED+ L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

A0A6J1GL91 auxin-induced protein X10A-like1.0e-4084Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIV  KQSL+RSSS GNG+ PKAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGITIPCSED  L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

A0A6J1I180 auxin-induced protein X10A-like1.3e-4083Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS
        MGFRLPRIVHAK+SL+RSSS GNG+  KAVDVPKGYFTVYVG  QKKRFVIPL+YLN+PSFQDLLSQAEEEFGYNHPMGGIT+PCSED  L L++SL+DS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS

A0A6J1JPE8 auxin-induced protein 15A-like1.5e-3983.33Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQS
        MGFRLPRIVHA+QSL+RSSS GNG+ PKAVDVPKGYFTVYVG V+K+RFVIPL+YLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSE+  L+L+QS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQS

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG76.3e-2457.14Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLS
        MGFRLP        +R++ S  N +  K +D PKGY  VYVG    KRFVIP+++LN+P FQDLLSQAEEEFGY+HPMGG+TIPCSED    ++  LS
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLS

P33079 Auxin-induced protein 10A51.4e-2356.57Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSD
        MGFR+  IV      RR+S     +  K VDVPKGY  VYVG  + +RF IP++YLNEPSFQ+LLSQAEEEFGY+HPMGG+TIPC E+  L ++  L++
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSD

P33080 Auxin-induced protein X10A6.8e-2656.57Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSD
        MGFRLP        +R++S   N +  K+V+VPKGY  VYVG  + +RF+IP++YLN+PSFQDLL+QAEEEFGY+HPMGG+TIPC ED  L ++  L+D
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSD

P33081 Auxin-induced protein 15A1.4e-2358.16Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLS
        MGFRLP        +R++S        KA D PKGY  VYVG  + KRFVIP++YLN+PSFQDLLSQAEEEFGY+HPMGG+TIPCSED    ++  L+
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLS

P33083 Auxin-induced protein 6B3.7e-2463.64Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSED
        MGFRLP        +R++S   N +  KAVDV KGY  VYVG  + +RFVIP++YLN+PSFQDLLSQAEEEFGY+HP GG+TIPCSED
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSED

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.4e-2147.52Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVG-AVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSD
        M  R+ R++ + + L +S S  + +    V +PKG+  VYVG  +QK+RFV+P+TYL+ P FQ LL +AEEEFG++HPMGG+TIPC+E   + L+  LS 
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVG-AVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSD

Query:  S
        S
Subjt:  S

AT4G34770.1 SAUR-like auxin-responsive protein family1.6e-2252.88Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSY---PKAVDVPKGYFTVYVG-AVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQS
        MG +L  +  AKQ L+RS S    S        +VPKG+  VYVG    +KRFVIP++YLN P FQ LL+ AEEEFG++HPMGG+TIPC+ED+  AL+  
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSY---PKAVDVPKGYFTVYVG-AVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQS

Query:  LSDS
        LS S
Subjt:  LSDS

AT4G34800.1 SAUR-like auxin-responsive protein family4.7e-2251.02Show/hide
Query:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVG--AVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQS
        M  RL R++++KQS ++ S            VPKG+  VYVG     KKRFV+P++YLN PSFQ LLS+AEEEFG+NHP+GG+TIPC E+  + L  S
Subjt:  MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVG--AVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQS

AT4G38840.1 SAUR-like auxin-responsive protein family3.1e-2653.68Show/hide
Query:  MGFRLPRIVH-AKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALS
        M  R+PR++  +KQ LR++  + + S   ++DVPKGY  VYVG    KRFV+P++YL++PSFQDLL +AEEEFG++HPMGG+TIPCSE+  + L+
Subjt:  MGFRLPRIVH-AKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALS

AT5G18080.1 SAUR-like auxin-responsive protein family1.4e-2150Show/hide
Query:  IVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSL
        ++ AK+ L RS+  G+ +       PKG+  VYVG  QKKR+++P++YLN+PSFQ LLS++EEEFG++HPMGG+TIPC ED  + ++  L
Subjt:  IVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCCGTTTGCCAAGAATTGTTCATGCTAAGCAAAGTCTTCGGCGATCTTCATCGATAGGAAATGGATCATATCCAAAGGCTGTGGACGTTCCAAAGGGGTACTT
TACAGTTTATGTTGGTGCAGTACAAAAGAAGCGTTTTGTCATCCCATTAACGTACTTGAATGAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGAT
ATAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAGGACCATTTACTCGCTCTCTCTCAAAGTTTGAGTGACTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCCGTTTGCCAAGAATTGTTCATGCTAAGCAAAGTCTTCGGCGATCTTCATCGATAGGAAATGGATCATATCCAAAGGCTGTGGACGTTCCAAAGGGGTACTT
TACAGTTTATGTTGGTGCAGTACAAAAGAAGCGTTTTGTCATCCCATTAACGTACTTGAATGAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGAT
ATAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAGGACCATTTACTCGCTCTCTCTCAAAGTTTGAGTGACTCATGA
Protein sequenceShow/hide protein sequence
MGFRLPRIVHAKQSLRRSSSIGNGSYPKAVDVPKGYFTVYVGAVQKKRFVIPLTYLNEPSFQDLLSQAEEEFGYNHPMGGITIPCSEDHLLALSQSLSDS