; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028250 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028250
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationscaffold47:1097531..1097833
RNA-Seq ExpressionMS028250
SyntenyMS028250
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022135743.1 auxin-induced protein 15A-like [Momordica charantia]9.7e-4694Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIV AKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLL QAEEEFGYDHPMGGITIPCSED FL LT+SLN+S
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

XP_022952255.1 auxin-induced protein X10A-like [Cucurbita moschata]7.4e-4694Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIVS KQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSED FLDLTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

XP_022952257.1 auxin-induced protein 15A-like [Cucurbita moschata]5.7e-4694Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIVS KQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSED FLDLTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

XP_023553777.1 auxin-induced protein X10A-like [Cucurbita pepo subsp. pepo]2.2e-4593Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIVS KQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSED FL+LTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

XP_038887900.1 auxin-induced protein X10A-like [Benincasa hispida]2.8e-4593Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIV+AKQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FLDLTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

TrEMBL top hitse value%identityAlignment
A0A0A0K4J0 Uncharacterized protein2.0e-4490Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIV+AKQSL+RSSSTGNGASPKAVDVPKGYF VY+GE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC+E  FLDLTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

A0A6J1C5R3 auxin-induced protein 15A-like4.7e-4694Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIV AKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLL QAEEEFGYDHPMGGITIPCSED FL LT+SLN+S
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

A0A6J1GJW5 auxin-induced protein 15A-like2.7e-4694Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIVS KQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSED FLDLTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

A0A6J1GL91 auxin-induced protein X10A-like3.6e-4694Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIVS KQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSED FLDLTRSLNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

A0A6J1HWI6 auxin-induced protein X10A-like8.8e-4592Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS
        MGFRLPRIVS KQSL+RSSSTGNGASPKAVDVPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPCSE  FLDLTR+LNDS
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG73.2e-2864.29Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN
        MGFRLP        +R++ S  N AS K +D PKGY  VYVGE   KRFVIP+S+LN+P FQDLLSQAEEEFGYDHPMGG+TIPCSEDLF  +T  L+
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN

P33079 Auxin-induced protein 10A52.8e-2762.63Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLND
        MGFR+  IV      RR+S     A+ K VDVPKGY  VYVG+ + +RF IP+SYLNEPSFQ+LLSQAEEEFGYDHPMGG+TIPC E+ FL++T  LN+
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLND

P33080 Auxin-induced protein X10A1.7e-2963.64Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLND
        MGFRLP        +R++S   N AS K+V+VPKGY  VYVG+ + +RF+IP+SYLN+PSFQDLL+QAEEEFGYDHPMGG+TIPC ED FL +T  LND
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLND

P33081 Auxin-induced protein 15A6.1e-2764.29Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN
        MGFRLP        +R++S        KA D PKGY  VYVGE + KRFVIP+SYLN+PSFQDLLSQAEEEFGYDHPMGG+TIPCSED+F  +T  LN
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN

P33083 Auxin-induced protein 6B2.5e-2865.31Show/hide
Query:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN
        MGFRLP        +R++S + N AS KAVDV KGY  VYVGE + +RFVIP+SYLN+PSFQDLLSQAEEEFGY HP GG+TIPCSED+F  +T  LN
Subjt:  MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN

Arabidopsis top hitse value%identityAlignment
AT4G38840.1 SAUR-like auxin-responsive protein family1.2e-3058.59Show/hide
Query:  MGFRLPRIV-SAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN
        M  R+PR++ S+KQ LR++    + +S  ++DVPKGY  VYVGE   KRFV+P+SYL++PSFQDLL +AEEEFG+DHPMGG+TIPCSE++F+DL    N
Subjt:  MGFRLPRIV-SAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLN

AT5G18010.1 SAUR-like auxin-responsive protein family2.9e-2455.56Show/hide
Query:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSL
        ++ AK+ L RS++ G+ A       PKG+  VYVGE QKKR+++PLSYL++PSFQ LLS++EEEFG+ HPMGG+TIPC ED F+++T  L
Subjt:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSL

AT5G18020.1 SAUR-like auxin-responsive protein family1.7e-2456.32Show/hide
Query:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLT
        ++ AK+ L RS++  + A       PKG+  VYVGE QKKR+++P+SYLN+PSFQ LLS++EEEFG+DHPMGG+TIPC ED F+++T
Subjt:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLT

AT5G18050.1 SAUR-like auxin-responsive protein family2.2e-2455.56Show/hide
Query:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSL
        ++ AK+ L RS++  + A       PKG+  VYVGE QKKR+++PLSYLN+PSFQ LLS++E+EFG+DHPMGG+TIPC ED F+++T  L
Subjt:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSL

AT5G18080.1 SAUR-like auxin-responsive protein family2.6e-2556.67Show/hide
Query:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSL
        ++ AK+ L RS+  G+ A       PKG+  VYVGE QKKR+++P+SYLN+PSFQ LLS++EEEFG+DHPMGG+TIPC ED F+++T  L
Subjt:  IVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCCGTTTGCCTAGAATTGTTAGTGCTAAGCAAAGTCTACGGCGATCTTCATCAACAGGAAATGGAGCATCTCCAAAGGCCGTTGACGTTCCAAAAGGGTACTT
TACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTATCTTACTTGAACGAGCCTTCATTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGAT
ATGATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGACCTTTTCCTGGATCTCACTCGGAGTTTGAATGACTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCCGTTTGCCTAGAATTGTTAGTGCTAAGCAAAGTCTACGGCGATCTTCATCAACAGGAAATGGAGCATCTCCAAAGGCCGTTGACGTTCCAAAAGGGTACTT
TACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTATCTTACTTGAACGAGCCTTCATTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGAT
ATGATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGACCTTTTCCTGGATCTCACTCGGAGTTTGAATGACTCATGA
Protein sequenceShow/hide protein sequence
MGFRLPRIVSAKQSLRRSSSTGNGASPKAVDVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCSEDLFLDLTRSLNDS