; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028252 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028252
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationscaffold47:1101016..1105036
RNA-Seq ExpressionMS028252
SyntenyMS028252
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645658.1 hypothetical protein Csa_020170 [Cucumis sativus]3.6e-4484.4Show/hide
Query:  IVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFL
        I+  GTY NMGFRLPRIV++KQSL+RSSSTGNGAS K V+VPKGYFTVYVGE  KKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FL
Subjt:  IVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFL

Query:  DLTRSLNES
        DLT+SLNES
Subjt:  DLTRSLNES

XP_022952255.1 auxin-induced protein X10A-like [Cucurbita moschata]2.3e-4390Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES
        MGFRLPRIVS+KQSL+RSSSTGNGAS KAV+VPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FLDLTRSLN+S
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES

XP_022952257.1 auxin-induced protein 15A-like [Cucurbita moschata]2.3e-4390Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES
        MGFRLPRIVS+KQSL+RSSSTGNGAS KAV+VPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FLDLTRSLN+S
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES

XP_022989148.1 auxin-induced protein 15A-like [Cucurbita maxima]2.1e-4482.73Show/hide
Query:  ERSGLIVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCC
        +R+ LI LFGTY NMGFRLPRIV ++QSL+RSSSTGNGAS KAV+VPKGYFTVYVGEV+K+RFVIPLSYLN+PSFQDLLSQAEEEFGYDHPMGGITIPC 
Subjt:  ERSGLIVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCC

Query:  EDIFLDLTRS
        E+ FL LT+S
Subjt:  EDIFLDLTRS

XP_038887900.1 auxin-induced protein X10A-like [Benincasa hispida]2.5e-4588.46Show/hide
Query:  TYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRS
        T+CNMGFRLPRIV++KQSL+RSSSTGNGAS KAV+VPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FLDLTRS
Subjt:  TYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRS

Query:  LNES
        LN+S
Subjt:  LNES

TrEMBL top hitse value%identityAlignment
A0A6J1C5R3 auxin-induced protein 15A-like2.5e-4390Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES
        MGFRLPRIV +KQSLRRSSSTGNGAS KAV+VPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLL QAEEEFGYDHPMGGITIPC ED FL LT+SLN S
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES

A0A6J1GJW5 auxin-induced protein 15A-like1.1e-4390Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES
        MGFRLPRIVS+KQSL+RSSSTGNGAS KAV+VPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FLDLTRSLN+S
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES

A0A6J1GL91 auxin-induced protein X10A-like1.1e-4390Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES
        MGFRLPRIVS+KQSL+RSSSTGNGAS KAV+VPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC ED FLDLTRSLN+S
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES

A0A6J1HWI6 auxin-induced protein X10A-like2.7e-4288Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES
        MGFRLPRIVS+KQSL+RSSSTGNGAS KAV+VPKGYFTVYVGE QKKRFVIPLSYLN+PSFQDLLSQAEEEFGY+HPMGGITIPC E  FLDLTR+LN+S
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES

A0A6J1JPE8 auxin-induced protein 15A-like1.0e-4482.73Show/hide
Query:  ERSGLIVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCC
        +R+ LI LFGTY NMGFRLPRIV ++QSL+RSSSTGNGAS KAV+VPKGYFTVYVGEV+K+RFVIPLSYLN+PSFQDLLSQAEEEFGYDHPMGGITIPC 
Subjt:  ERSGLIVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCC

Query:  EDIFLDLTRS
        E+ FL LT+S
Subjt:  EDIFLDLTRS

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG71.2e-2661.22Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN
        MGFRLP        +R++ S  N AS K ++ PKGY  VYVGE   KRFVIP+S+LN+P FQDLLSQAEEEFGYDHPMGG+TIPC ED+F  +T  L+
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN

P33079 Auxin-induced protein 10A51.6e-2662.63Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNE
        MGFR+  IV      RR+S     A+ K V+VPKGY  VYVG+ + +RF IP+SYLNEPSFQ+LLSQAEEEFGYDHPMGG+TIPC E+ FL++T  LNE
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNE

P33080 Auxin-induced protein X10A2.2e-2862.63Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNE
        MGFRLP        +R++S   N AS K+V VPKGY  VYVG+ + +RF+IP+SYLN+PSFQDLL+QAEEEFGYDHPMGG+TIPC ED FL +T  LN+
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNE

P33081 Auxin-induced protein 15A5.9e-2662.24Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN
        MGFRLP        +R++S        KA + PKGY  VYVGE + KRFVIP+SYLN+PSFQDLLSQAEEEFGYDHPMGG+TIPC ED+F  +T  LN
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN

P33083 Auxin-induced protein 6B3.1e-2763.27Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN
        MGFRLP        +R++S + N AS KAV+V KGY  VYVGE + +RFVIP+SYLN+PSFQDLLSQAEEEFGY HP GG+TIPC ED+F  +T  LN
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family1.5e-2453.92Show/hide
Query:  MGFRLPRIV-SSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGE-VQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN
        M  R+ R++ SSKQ L+  S + N      V +PKG+  VYVGE +QK+RFV+P++YL+ P FQ LL +AEEEFG+DHPMGG+TIPC E IF+DL   L+
Subjt:  MGFRLPRIV-SSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGE-VQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN

Query:  ES
         S
Subjt:  ES

AT4G34770.1 SAUR-like auxin-responsive protein family9.7e-2457.14Show/hide
Query:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAV----NVPKGYFTVYVGEV-QKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTR
        MG +L  +  +KQ L+RS S    ASL A     NVPKG+  VYVGE   +KRFVIP+SYLN P FQ LL+ AEEEFG+DHPMGG+TIPC ED F  L  
Subjt:  MGFRLPRIVSSKQSLRRSSSTGNGASLKAV----NVPKGYFTVYVGEV-QKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTR

Query:  SLNES
         L+ S
Subjt:  SLNES

AT4G38840.1 SAUR-like auxin-responsive protein family6.9e-3058.59Show/hide
Query:  MGFRLPRIV-SSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN
        M  R+PR++ SSKQ LR++    + +S  +++VPKGY  VYVGE   KRFV+P+SYL++PSFQDLL +AEEEFG+DHPMGG+TIPC E+IF+DL    N
Subjt:  MGFRLPRIV-SSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLN

AT5G18020.1 SAUR-like auxin-responsive protein family7.4e-2455.17Show/hide
Query:  IVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLT
        ++ +K+ L RS++  + A       PKG+  VYVGE QKKR+++P+SYLN+PSFQ LLS++EEEFG+DHPMGG+TIPC ED F+++T
Subjt:  IVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLT

AT5G18080.1 SAUR-like auxin-responsive protein family1.1e-2455.56Show/hide
Query:  IVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSL
        ++ +K+ L RS+  G+ A       PKG+  VYVGE QKKR+++P+SYLN+PSFQ LLS++EEEFG+DHPMGG+TIPC ED F+++T  L
Subjt:  IVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSFQDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAGCAAAGTCTTCGACGATCTCCATCAACGGGAAATGGAGCATCTCCGAGAGCTGCAGACGTTCCGAAGGGCTACTTTACGGTTTATGTTGGTGAGGGACGAAAG
AAGCGGTCTCATAGTTCTTTTTGGAACATATTGTAACATGGGTTTTCGTTTGCCTAGAATTGTTAGTTCTAAGCAAAGTCTTCGGCGATCTTCATCAACAGGAAATGGAG
CATCTCTGAAGGCTGTTAACGTTCCCAAAGGGTACTTTACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTTTCTTACTTGAACGAGCCATCTTTC
CAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATACGATCATCCGATGGGTGGCATCACAATTCCTTGCTGTGAAGACATTTTCCTAGATCTCACTCGGAGTTTGAA
TGAGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAGCAAAGTCTTCGACGATCTCCATCAACGGGAAATGGAGCATCTCCGAGAGCTGCAGACGTTCCGAAGGGCTACTTTACGGTTTATGTTGGTGAGGGACGAAAG
AAGCGGTCTCATAGTTCTTTTTGGAACATATTGTAACATGGGTTTTCGTTTGCCTAGAATTGTTAGTTCTAAGCAAAGTCTTCGGCGATCTTCATCAACAGGAAATGGAG
CATCTCTGAAGGCTGTTAACGTTCCCAAAGGGTACTTTACAGTTTATGTTGGTGAGGTACAAAAGAAGCGTTTTGTCATCCCACTTTCTTACTTGAACGAGCCATCTTTC
CAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATACGATCATCCGATGGGTGGCATCACAATTCCTTGCTGTGAAGACATTTTCCTAGATCTCACTCGGAGTTTGAA
TGAGTCATGA
Protein sequenceShow/hide protein sequence
MLSKVFDDLHQREMEHLRELQTFRRATLRFMLVRDERSGLIVLFGTYCNMGFRLPRIVSSKQSLRRSSSTGNGASLKAVNVPKGYFTVYVGEVQKKRFVIPLSYLNEPSF
QDLLSQAEEEFGYDHPMGGITIPCCEDIFLDLTRSLNES