; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028254 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028254
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationscaffold47:1113239..1113499
RNA-Seq ExpressionMS028254
SyntenyMS028254
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572089.1 Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia]7.8e-2870.93Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        M + +LL+R S ++ +  + +PKG+CAVYVGE QKKRFVIP+ YL QPCFQDLL QAE EFGY HPM GLTIQCREDIFTNLISQL
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

KGN43209.1 hypothetical protein Csa_020258 [Cucumis sativus]2.3e-2772.09Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        M I +LL+R+S ++ +  + +PKG+CAVYVGE QKKRFVIPI YL QPCFQ LL QAE EFGY HPM GLTIQCREDIFTNLISQL
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

XP_011658582.1 auxin-responsive protein SAUR24 [Cucumis sativus]5.2e-2466.28Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        M +  LL+RS     Q  S+IPKG+CAVYVGE+QKKRF+IPI+YL QPCFQ+LL Q E EFGY+HPM GLTI C++ IFTNLIS+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

XP_016900447.1 PREDICTED: auxin-induced protein 15A-like [Cucumis melo]2.1e-2571.95Show/hide
Query:  RLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        R+LQ     S +  + +PKG+CAVYVGE QKKRFVIP+ YL QPCFQ LL QAE EFGY HPM GLTIQCREDIFTNLISQL
Subjt:  RLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]2.3e-2772.09Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        MG+ +LL+R     NQ  SA+PKG+CAVYVGE+QKKRFVIPI+YL QPCFQ+LLCQAE EFGY HPM GLTI CR+DIFT+LIS+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

TrEMBL top hitse value%identityAlignment
A0A0A0K2F9 Uncharacterized protein1.1e-2772.09Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        M I +LL+R+S ++ +  + +PKG+CAVYVGE QKKRFVIPI YL QPCFQ LL QAE EFGY HPM GLTIQCREDIFTNLISQL
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

A0A0A0K5V1 Uncharacterized protein7.1e-2769.77Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        MG+ RLL+RSS+  NQR S +PKG+CAVYVGENQKKRFVIPI YL QPCFQDLL Q   EF Y HPM GLT  C +DIF +LIS L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

A0A1S4DWU0 auxin-induced protein 15A-like1.0e-2571.95Show/hide
Query:  RLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        R+LQ     S +  + +PKG+CAVYVGE QKKRFVIP+ YL QPCFQ LL QAE EFGY HPM GLTIQCREDIFTNLISQL
Subjt:  RLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

A0A5D3CL76 Auxin-induced protein 15A-like1.0e-2571.95Show/hide
Query:  RLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        R+LQ     S +  + +PKG+CAVYVGE QKKRFVIP+ YL QPCFQ LL QAE EFGY HPM GLTIQCREDIFTNLISQL
Subjt:  RLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

A0A6J1C4W2 auxin-responsive protein SAUR24-like1.1e-2772.09Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        MG+ +LL+R     NQ  SA+PKG+CAVYVGE+QKKRFVIPI+YL QPCFQ+LLCQAE EFGY HPM GLTI CR+DIFT+LIS+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

SwissProt top hitse value%identityAlignment
Q9FJF7 Auxin-responsive protein SAUR221.3e-2053.49Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        +G  ++L RS+       SA PKG  AVYVGE+QKKR+++P++YL QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

Q9FJF9 Auxin-responsive protein SAUR217.4e-2155.56Show/hide
Query:  LLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        LL    + S    SA PKG  AVYVGE+QKKR+++P++YL+QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+L
Subjt:  LLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

Q9FJG0 Auxin-responsive protein SAUR202.1e-2054.12Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQ
        +G  ++L RS+  +    SA PKG  AVYVGE+QKKR+++PI+YL QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQ

Q9FJG1 Auxin-responsive protein SAUR195.6e-2154.65Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        +G  ++L RS+      GSA PKG  AVYVGE+QKKR+++P++YL+QP FQ LL ++E EFG+ HPM GLTI C ED F N+ S+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

Q9FK62 Auxin-responsive protein SAUR247.4e-2154.65Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        +G  ++L RS+      GSA PKG  AVYVGE+QKKR+++P++YL QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family3.1e-2256.67Show/hide
Query:  ICRLLQRS-----SVTSNQRGSAIPKGHCAVYVGE-NQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        I R+LQ S     S++ +    AIPKGH AVYVGE  QK+RFV+P+ YL+ PCFQ LL +AE EFG++HPM GLTI C E IF +L S+L
Subjt:  ICRLLQRS-----SVTSNQRGSAIPKGHCAVYVGE-NQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

AT5G18010.1 SAUR-like auxin-responsive protein family4.0e-2254.65Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        +G  ++L RS+      GSA PKG  AVYVGE+QKKR+++P++YL+QP FQ LL ++E EFG+ HPM GLTI C ED F N+ S+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

AT5G18030.1 SAUR-like auxin-responsive protein family5.2e-2255.56Show/hide
Query:  LLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        LL    + S    SA PKG  AVYVGE+QKKR+++P++YL+QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+L
Subjt:  LLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

AT5G18050.1 SAUR-like auxin-responsive protein family8.9e-2253.49Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        +G  ++L RS+       SA PKG  AVYVGE+QKKR+++P++YL QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL

AT5G18080.1 SAUR-like auxin-responsive protein family5.2e-2254.65Show/hide
Query:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL
        +G  ++L RS+      GSA PKG  AVYVGE+QKKR+++P++YL QP FQ LL ++E EFG++HPM GLTI C ED F N+ S+L
Subjt:  MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTTGTCGCCTTCTTCAAAGGTCTTCTGTGACATCAAACCAGAGAGGTTCAGCAATTCCCAAGGGACATTGTGCAGTCTATGTTGGAGAGAACCAAAAGAAGAG
GTTTGTGATCCCCATAGCTTACTTGACTCAGCCATGCTTCCAAGACTTGCTTTGTCAAGCTGAAGGAGAATTTGGTTACAATCATCCCATGGATGGTCTTACCATTCAAT
GTAGAGAAGACATCTTCACCAATCTCATTTCTCAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAATTTGTCGCCTTCTTCAAAGGTCTTCTGTGACATCAAACCAGAGAGGTTCAGCAATTCCCAAGGGACATTGTGCAGTCTATGTTGGAGAGAACCAAAAGAAGAG
GTTTGTGATCCCCATAGCTTACTTGACTCAGCCATGCTTCCAAGACTTGCTTTGTCAAGCTGAAGGAGAATTTGGTTACAATCATCCCATGGATGGTCTTACCATTCAAT
GTAGAGAAGACATCTTCACCAATCTCATTTCTCAGCTTTAA
Protein sequenceShow/hide protein sequence
MGICRLLQRSSVTSNQRGSAIPKGHCAVYVGENQKKRFVIPIAYLTQPCFQDLLCQAEGEFGYNHPMDGLTIQCREDIFTNLISQL