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MS028259 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028259
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationscaffold47:1136392..1136664
RNA-Seq ExpressionMS028259
SyntenyMS028259
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049710.1 auxin-induced protein 15A-like [Cucumis melo var. makuwa]1.3e-2869.32Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        M LRHLLK     RN+ VSAVPKGYCAVYVG++QKKRF+IP+ YLN+PC Q+LL + EEEF YYHPMGGLT HCRDDIF + ISH+++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

KAE8645660.1 hypothetical protein Csa_020551 [Cucumis sativus]2.2e-2875Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLIS
        MG+R LLK     RNQ VS +PKGYCAVYVGENQKKRFVIP+T+LNQ C Q+LLS+ EE+F Y+HPMGGLT HCRDDIFTDLIS
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLIS

KAE8645661.1 hypothetical protein Csa_020412 [Cucumis sativus]7.9e-3184Show/hide
Query:  QRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQL
        +RVS VPKGYCAVYVGENQKKRFVIP+TYLNQPC QDLL++  EEF+YYHPMGGLTFHC DDIF DLISHL+EQL
Subjt:  QRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQL

XP_011658582.1 auxin-responsive protein SAUR24 [Cucumis sativus]1.8e-2769.32Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        M L HLLKRS     Q VS++PKGYCAVYVGE+QKKRF+IP++YLNQPC Q+LLS+ EEEF Y+HPMGGLT HC+D IFT+LIS L++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]6.1e-3177.27Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        MGLR LLK     RNQ VSAVPKGYCAVYVGE+QKKRFVIP++YLNQPC Q+LL + EEEF YYHPMGGLT HCRDDIFTDLIS L++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

TrEMBL top hitse value%identityAlignment
A0A0A0K4K1 Uncharacterized protein1.5e-3075Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        M L+HLLK     RNQ VSAVPKGYCAVYVGE+QKKRFVIP+TYLN+PC Q LL + EEEF YYHPMGGLT HCRDDIFTDLIS++++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

A0A0A0K5U4 Uncharacterized protein8.8e-2869.32Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        M L HLLKRS     Q VS++PKGYCAVYVGE+QKKRF+IP++YLNQPC Q+LLS+ EEEF Y+HPMGGLT HC+D IFT+LIS L++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

A0A0A0K5V1 Uncharacterized protein2.3e-3681.11Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQL
        MGLR LL+RS +  NQRVS VPKGYCAVYVGENQKKRFVIP+TYLNQPC QDLL++  EEF+YYHPMGGLTFHC DDIF DLISHL+EQL
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQL

A0A5A7U363 Auxin-induced protein 15A-like6.1e-2969.32Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        M LRHLLK     RN+ VSAVPKGYCAVYVG++QKKRF+IP+ YLN+PC Q+LL + EEEF YYHPMGGLT HCRDDIF + ISH+++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

A0A6J1C4W2 auxin-responsive protein SAUR24-like2.9e-3177.27Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE
        MGLR LLK     RNQ VSAVPKGYCAVYVGE+QKKRFVIP++YLNQPC Q+LL + EEEF YYHPMGGLT HCRDDIFTDLIS L++
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSE

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG72.2e-2059.3Show/hide
Query:  LKRSLVTRNQRVSAV---PKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQ
        ++++L  RN+  S V   PKGY AVYVGEN  KRFVIPV++LNQP  QDLLS+ EEEF Y HPMGGLT  C +D+F  + S LS Q
Subjt:  LKRSLVTRNQRVSAV---PKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQ

Q9FJF6 Auxin-responsive protein SAUR235.5e-1953.66Show/hide
Query:  LLKRSLVTRN-QRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        L+ + +++R+   VSA PKG+ AVYVGE+QKKR+++P++YLNQP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S L
Subjt:  LLKRSLVTRN-QRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL

Q9FJF7 Auxin-responsive protein SAUR221.1e-1952.33Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        +G + +L RS       VSA PKG+ AVYVGE+QKKR+++P++YLNQP  Q LLS+ E+EF + HPMGGLT  C +D F ++ S L
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL

Q9FJG0 Auxin-responsive protein SAUR204.2e-1952.38Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLIS
        +G + +L RS        SA PKG+ AVYVGE+QKKR+++P++YLNQP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLIS

Q9FK62 Auxin-responsive protein SAUR245.5e-1953.49Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        +G + +L RS        SA PKG+ AVYVGE+QKKR+++PV+YLNQP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S L
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL

Arabidopsis top hitse value%identityAlignment
AT5G18020.1 SAUR-like auxin-responsive protein family3.0e-2052.38Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLIS
        +G + +L RS        SA PKG+ AVYVGE+QKKR+++P++YLNQP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLIS

AT5G18030.1 SAUR-like auxin-responsive protein family6.7e-2051.19Show/hide
Query:  LRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        +R LL    +      SA PKG+ AVYVGE+QKKR+++P++YL+QP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S L
Subjt:  LRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL

AT5G18050.1 SAUR-like auxin-responsive protein family7.9e-2152.33Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        +G + +L RS       VSA PKG+ AVYVGE+QKKR+++P++YLNQP  Q LLS+ E+EF + HPMGGLT  C +D F ++ S L
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL

AT5G18060.1 SAUR-like auxin-responsive protein family3.9e-2053.66Show/hide
Query:  LLKRSLVTRN-QRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        L+ + +++R+   VSA PKG+ AVYVGE+QKKR+++P++YLNQP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S L
Subjt:  LLKRSLVTRN-QRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL

AT5G18080.1 SAUR-like auxin-responsive protein family3.9e-2053.49Show/hide
Query:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        +G + +L RS        SA PKG+ AVYVGE+QKKR+++PV+YLNQP  Q LLS+ EEEF + HPMGGLT  C +D F ++ S L
Subjt:  MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCTTCGTCATCTTCTCAAGCGGTCTCTGGTGACAAGAAACCAGAGAGTTTCAGCAGTTCCCAAGGGCTATTGTGCAGTGTATGTTGGAGAGAATCAAAAGAAGCG
GTTCGTGATTCCAGTAACTTACTTGAATCAGCCATGTCTACAAGACTTGCTTAGTGAAGATGAAGAAGAATTTGATTACTATCATCCAATGGGTGGTCTTACATTTCACT
GCAGAGATGATATCTTCACTGATCTGATCTCTCACTTGAGCGAACAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCTTCGTCATCTTCTCAAGCGGTCTCTGGTGACAAGAAACCAGAGAGTTTCAGCAGTTCCCAAGGGCTATTGTGCAGTGTATGTTGGAGAGAATCAAAAGAAGCG
GTTCGTGATTCCAGTAACTTACTTGAATCAGCCATGTCTACAAGACTTGCTTAGTGAAGATGAAGAAGAATTTGATTACTATCATCCAATGGGTGGTCTTACATTTCACT
GCAGAGATGATATCTTCACTGATCTGATCTCTCACTTGAGCGAACAACTATGA
Protein sequenceShow/hide protein sequence
MGLRHLLKRSLVTRNQRVSAVPKGYCAVYVGENQKKRFVIPVTYLNQPCLQDLLSEDEEEFDYYHPMGGLTFHCRDDIFTDLISHLSEQL