; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028260 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028260
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive protein
Genome locationscaffold47:1137465..1138322
RNA-Seq ExpressionMS028260
SyntenyMS028260
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049710.1 auxin-induced protein 15A-like [Cucumis melo var. makuwa]1.9e-2768.18Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        M LRHLLKR+     + VSAVPKGYCAVYVG++QK RF+IP+ YLN+ C Q+LL Q EEEF YYHPMGGLT HCRDDIF + ISH+N+
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

KAE8645660.1 hypothetical protein Csa_020551 [Cucumis sativus]8.4e-2873.81Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLIS
        MG+R LLKR+     Q VS +PKGYCAVYVGENQK RFVIP+T+LNQ C Q+LLSQ EE+F Y+HPMGGLT HCRDDIFTDLIS
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLIS

KAE8645661.1 hypothetical protein Csa_020412 [Cucumis sativus]3.1e-3084Show/hide
Query:  QRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNEQL
        +RVS VPKGYCAVYVGENQK RFVIP+TYLNQ C QDLL+Q  EEF+YYHPMGGLTFHC DDIF DLISHLNEQL
Subjt:  QRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNEQL

KAG6572089.1 Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia]8.4e-2873.56Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLN
        M L  LL+R S   K+ V+ VPKGYCAVYVGE QK RFVIPVTYLNQ C QDLLSQAE+EF YYHPMGGLT  CR+DIFT+LIS LN
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLN

XP_022136192.1 auxin-responsive protein SAUR24-like [Momordica charantia]2.4e-3077.27Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        MGLR LLKR+     Q VSAVPKGYCAVYVGE+QK RFVIP++YLNQ C Q+LL QAEEEF YYHPMGGLT HCRDDIFTDLIS LN+
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

TrEMBL top hitse value%identityAlignment
A0A0A0K2F9 Uncharacterized protein2.6e-2771.26Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLN
        M +  LL+R+S   K+ V+ VPKGYCAVYVGE QK RFVIP+TYLNQ C Q LLSQAEEEF YYHPMGGLT  CR+DIFT+LIS LN
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLN

A0A0A0K4K1 Uncharacterized protein2.2e-2973.86Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        M L+HLLKR+     Q VSAVPKGYCAVYVGE+QK RFVIP+TYLN+ C Q LL Q EEEF YYHPMGGLT HCRDDIFTDLIS++N+
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

A0A0A0K5V1 Uncharacterized protein2.4e-3682.22Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNEQL
        MGLR LL+RSS+ G QRVS VPKGYCAVYVGENQK RFVIP+TYLNQ C QDLL+Q  EEF+YYHPMGGLTFHC DDIF DLISHLNEQL
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNEQL

A0A5A7U363 Auxin-induced protein 15A-like9.1e-2868.18Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        M LRHLLKR+     + VSAVPKGYCAVYVG++QK RF+IP+ YLN+ C Q+LL Q EEEF YYHPMGGLT HCRDDIF + ISH+N+
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

A0A6J1C4W2 auxin-responsive protein SAUR24-like1.1e-3077.27Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        MGLR LLKR+     Q VSAVPKGYCAVYVGE+QK RFVIP++YLNQ C Q+LL QAEEEF YYHPMGGLT HCRDDIFTDLIS LN+
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG77.4e-1964.38Show/hide
Query:  RVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNEQ
        +V   PKGY AVYVGEN K RFVIPV++LNQ   QDLLSQAEEEF Y HPMGGLT  C +D+F  + S L+ Q
Subjt:  RVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNEQ

P33079 Auxin-induced protein 10A51.7e-1852.69Show/hide
Query:  MGLR--HLLKRSSVIGKQRVSA---VPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        MG R   +++R+S    Q  S    VPKGY AVYVG+  + RF IPV+YLN+   Q+LLSQAEEEF Y HPMGGLT  C+++ F ++ +HLNE
Subjt:  MGLR--HLLKRSSVIGKQRVSA---VPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

P33080 Auxin-induced protein X10A9.7e-1954.12Show/hide
Query:  LKRSSVIGKQRVS---AVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE
        ++++S+   Q  S    VPKGY  VYVG+  + RF+IPV+YLNQ   QDLL+QAEEEF Y HPMGGLT  C++D F  + SHLN+
Subjt:  LKRSSVIGKQRVS---AVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLNE

Q9FJG1 Auxin-responsive protein SAUR197.4e-1948.35Show/hide
Query:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        F++  +G + +L RS+  G    SA PKG+ AVYVGE+QK R+++P++YL+Q   Q LLS++EEEF + HPMGGLT  C +D F ++ S L
Subjt:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL

Q9FK62 Auxin-responsive protein SAUR242.6e-1950.55Show/hide
Query:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        F++  +G + +L RS+  G    SA PKG+ AVYVGE+QK R+++PV+YLNQ   Q LLS++EEEF + HPMGGLT  C +D F ++ S L
Subjt:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL

Arabidopsis top hitse value%identityAlignment
AT4G38840.1 SAUR-like auxin-responsive protein family1.5e-1950.57Show/hide
Query:  RHLLKRSSVIGKQRVSA---VPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLN
        + +L+++ ++     S+   VPKGY AVYVGE    RFV+PV+YL+Q   QDLL +AEEEF + HPMGGLT  C ++IF DL S  N
Subjt:  RHLLKRSSVIGKQRVSA---VPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHLN

AT5G18010.1 SAUR-like auxin-responsive protein family5.3e-2048.35Show/hide
Query:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        F++  +G + +L RS+  G    SA PKG+ AVYVGE+QK R+++P++YL+Q   Q LLS++EEEF + HPMGGLT  C +D F ++ S L
Subjt:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL

AT5G18020.1 SAUR-like auxin-responsive protein family1.5e-1948.31Show/hide
Query:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLIS
        F++  +G + +L RS+       SA PKG+ AVYVGE+QK R+++P++YLNQ   Q LLS++EEEF + HPMGGLT  C +D F ++ S
Subjt:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLIS

AT5G18050.1 SAUR-like auxin-responsive protein family2.6e-1950Show/hide
Query:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        +G + +L RS+      VSA PKG+ AVYVGE+QK R+++P++YLNQ   Q LLS++E+EF + HPMGGLT  C +D F ++ S L
Subjt:  MGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL

AT5G18080.1 SAUR-like auxin-responsive protein family1.8e-2050.55Show/hide
Query:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL
        F++  +G + +L RS+  G    SA PKG+ AVYVGE+QK R+++PV+YLNQ   Q LLS++EEEF + HPMGGLT  C +D F ++ S L
Subjt:  FIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIFTDLISHL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGAGCACGTGAGAACTGGTTATCATGGGAATCCGTCTGCCTATATGGAGCATTGAAGCATTCTTCCATCAATTTTATCCAGAAAGATATGGGTCTTCGTCATCT
TCTCAAGCGATCTTCAGTGATAGGAAAACAGAGAGTTTCAGCAGTTCCCAAGGGCTATTGTGCAGTGTATGTTGGAGAGAATCAAAAGAACCGGTTCGTGATTCCAGTAA
CTTACTTGAATCAGCAATGTCTACAAGACTTGCTTAGTCAAGCTGAAGAAGAATTTGATTACTATCATCCGATGGGCGGTCTCACATTTCACTGCAGAGATGACATCTTC
ACCGATCTAATCTCTCACTTGAACGAACAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGAGCACGTGAGAACTGGTTATCATGGGAATCCGTCTGCCTATATGGAGCATTGAAGCATTCTTCCATCAATTTTATCCAGAAAGATATGGGTCTTCGTCATCT
TCTCAAGCGATCTTCAGTGATAGGAAAACAGAGAGTTTCAGCAGTTCCCAAGGGCTATTGTGCAGTGTATGTTGGAGAGAATCAAAAGAACCGGTTCGTGATTCCAGTAA
CTTACTTGAATCAGCAATGTCTACAAGACTTGCTTAGTCAAGCTGAAGAAGAATTTGATTACTATCATCCGATGGGCGGTCTCACATTTCACTGCAGAGATGACATCTTC
ACCGATCTAATCTCTCACTTGAACGAACAACTATGA
Protein sequenceShow/hide protein sequence
MVGARENWLSWESVCLYGALKHSSINFIQKDMGLRHLLKRSSVIGKQRVSAVPKGYCAVYVGENQKNRFVIPVTYLNQQCLQDLLSQAEEEFDYYHPMGGLTFHCRDDIF
TDLISHLNEQL