; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028261 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028261
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSAUR-like auxin-responsive protein family
Genome locationscaffold47:1139668..1139952
RNA-Seq ExpressionMS028261
SyntenyMS028261
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON93801.1 Small auxin-up RNA [Trema orientale]1.5e-2460Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
        MGFRL G+  AKQ+ +RS    NQ+ L AADVPKG L      +  ++R  IP+SYLN+P FQDLLSQAEEEFG+DHPMGG+TIPC ED F+DL S+  A
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA

XP_022135742.1 indole-3-acetic acid-induced protein ARG7-like [Momordica charantia]6.8e-2568.09Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFML-----ERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLT
        MGFRL  I  AKQ  RRS  TGN A  KA D+PKG     +     +R  IP+SYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSED FL+LT
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFML-----ERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLT

XP_022135745.1 auxin-induced protein 15A-like [Momordica charantia]6.8e-2567.37Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKG-----ALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFRL  I  AKQ  RRSP TGN A  +AAD PKG     A +   +R  IP+SYLNQPLFQDLLSQAEEEFGY+HPMGGITIPCSE+ FL+LT+
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKG-----ALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

XP_022135927.1 indole-3-acetic acid-induced protein ARG7-like [Momordica charantia]3.8e-4498.91Show/hide
Query:  FRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
        FRLSGITRAKQVH RSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
Subjt:  FRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA

XP_042509443.1 auxin-responsive protein SAUR22-like [Macadamia integrifolia]2.0e-2462.5Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL-----QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQ
        MG RL G+  AKQ+ RRS L GN+ D    DVPKG L     +   +R  +P+SYLNQPLFQDLLSQAEEEFG+DHPMGG+TIPC ED F+DLTS+
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL-----QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQ

TrEMBL top hitse value%identityAlignment
A0A2P5AT71 Small auxin-up RNA2.8e-2459Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
        MGFRL G+  AKQ+ +RS    NQ+ L AAD+PKG L      +  ++R  IP+SYLN+P FQDLLSQAEEEFG+DHPMGG+TIPC ED F+DL S   A
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA

A0A2P5F7Q0 Small auxin-up RNA7.3e-2560Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
        MGFRL G+  AKQ+ +RS    NQ+ L AADVPKG L      +  ++R  IP+SYLN+P FQDLLSQAEEEFG+DHPMGG+TIPC ED F+DL S+  A
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA

A0A6J1C1X1 auxin-induced protein 15A-like3.3e-2567.37Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKG-----ALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFRL  I  AKQ  RRSP TGN A  +AAD PKG     A +   +R  IP+SYLNQPLFQDLLSQAEEEFGY+HPMGGITIPCSE+ FL+LT+
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKG-----ALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

A0A6J1C3L5 indole-3-acetic acid-induced protein ARG7-like3.3e-2568.09Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFML-----ERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLT
        MGFRL  I  AKQ  RRS  TGN A  KA D+PKG     +     +R  IP+SYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSED FL+LT
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFML-----ERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLT

A0A6J1C452 indole-3-acetic acid-induced protein ARG7-like1.9e-4498.91Show/hide
Query:  FRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
        FRLSGITRAKQVH RSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA
Subjt:  FRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA

SwissProt top hitse value%identityAlignment
P32295 Indole-3-acetic acid-induced protein ARG75.6e-2258.51Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFM----LERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFRL GI       R++    N+A  K  D PKG L       ++R  IP+S+LNQPLFQDLLSQAEEEFGYDHPMGG+TIPCSED F  +TS
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFM----LERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

P33079 Auxin-induced protein 10A52.3e-2054.26Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFR++GI       RR+     QA  K  DVPKG         + R  IP+SYLN+P FQ+LLSQAEEEFGYDHPMGG+TIPC E+ FL++T+
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

P33080 Auxin-induced protein X10A1.5e-2258.51Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFRL GI       R++ +  NQA  K+ +VPKG L       + R  IP+SYLNQP FQDLL+QAEEEFGYDHPMGG+TIPC ED FL +TS
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

P33081 Auxin-induced protein 15A3.6e-2159.57Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFRL GI +A                KAAD PKG L       L+R  IP+SYLNQP FQDLLSQAEEEFGYDHPMGG+TIPCSED F  +TS
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

P33083 Auxin-induced protein 6B8.1e-2157.45Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MGFRL GI       R++  + NQA  KA DV KG L       + R  IP+SYLN+P FQDLLSQAEEEFGY HP GG+TIPCSED F  +TS
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQF----MLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

Arabidopsis top hitse value%identityAlignment
AT3G03820.1 SAUR-like auxin-responsive protein family4.2e-1756.16Show/hide
Query:  KAADVPKGAL-------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFR
        K    PKG L       Q   +R  +P+SYLNQPLFQ LL +AEEEFG++HPMGG+TIPC ED FL +TSQ +
Subjt:  KAADVPKGAL-------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFR

AT3G03850.1 SAUR-like auxin-responsive protein family1.9e-1758.21Show/hide
Query:  PKGALQFML------ERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFR
        PKG L   +      +R  +P+SYLNQPLFQDLLS+ EEEFG+DHPMGG+TIPC  D F+ +TSQ +
Subjt:  PKGALQFML------ERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFR

AT4G34770.1 SAUR-like auxin-responsive protein family3.5e-1952Show/hide
Query:  MGFRLSGITRAKQVHRRSPLTGNQADLKAA----DVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS
        MG +L G+++AKQ  +RS L+   A L A     +VPKG +       +  +R  IPISYLN PLFQ LL+ AEEEFG+DHPMGG+TIPC+ED+F  L S
Subjt:  MGFRLSGITRAKQVHRRSPLTGNQADLKAA----DVPKGAL------QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTS

AT4G38840.1 SAUR-like auxin-responsive protein family3.7e-2151.72Show/hide
Query:  AKQVHRRSPLTGNQADLKAADVPKGAL-----QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQF
        +KQ+ R++ L  + +   + DVPKG L     +  ++R  +P+SYL+QP FQDLL +AEEEFG+DHPMGG+TIPCSE+ F+DL S+F
Subjt:  AKQVHRRSPLTGNQADLKAADVPKGAL-----QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQF

AT5G18020.1 SAUR-like auxin-responsive protein family2.5e-1757.14Show/hide
Query:  AADVPKGAL-----QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFR
        A+  PKG L     +   +R  +PISYLNQP FQ LLS++EEEFG+DHPMGG+TIPC ED F+++TS+F+
Subjt:  AADVPKGAL-----QFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCAGGTTGTCCGGTATTACTCGTGCTAAGCAAGTCCATCGGCGATCTCCGTTGACTGGAAACCAAGCAGATTTGAAGGCTGCAGATGTTCCAAAGGGTGCTTT
ACAGTTTATGTTGGAGAGGGACAAAATTCCGATATCTTACTTGAACCAGCCTTTGTTTCAAGACTTGCTAAGCCAAGCAGAAGAAGAATTTGGATATGATCATCCAATGG
GTGGCATCACAATTCCATGTAGTGAAGACTTTTTCCTTGATCTTACTTCTCAATTTAGAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCAGGTTGTCCGGTATTACTCGTGCTAAGCAAGTCCATCGGCGATCTCCGTTGACTGGAAACCAAGCAGATTTGAAGGCTGCAGATGTTCCAAAGGGTGCTTT
ACAGTTTATGTTGGAGAGGGACAAAATTCCGATATCTTACTTGAACCAGCCTTTGTTTCAAGACTTGCTAAGCCAAGCAGAAGAAGAATTTGGATATGATCATCCAATGG
GTGGCATCACAATTCCATGTAGTGAAGACTTTTTCCTTGATCTTACTTCTCAATTTAGAGCTTGA
Protein sequenceShow/hide protein sequence
MGFRLSGITRAKQVHRRSPLTGNQADLKAADVPKGALQFMLERDKIPISYLNQPLFQDLLSQAEEEFGYDHPMGGITIPCSEDFFLDLTSQFRA