CuGenDBv2

Gene ID	MS028282
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box domain-containing protein
Genome location	scaffold47:2392411..2392890
RNA-Seq Expression	MS028282
Synteny	MS028282
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572228.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-54

73.42

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Query:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSP  S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL

Query:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKP
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKP
Subjt:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKP

KAG7011864.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.4e-56

73.91

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Query:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSP  S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL

Query:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

XP_022136160.1 F-box protein SNE-like [Momordica charantia]

2.9e-84

100

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Query:  MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLL
        MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLL
Subjt:  MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLL

Query:  ATFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        ATFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
Subjt:  ATFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

XP_022952371.1 F-box protein SNE-like [Cucurbita moschata]

6.7e-57

74.53

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Query:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPP S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL

Query:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

XP_022969281.1 F-box protein SNE-like [Cucurbita maxima]

4.3e-56

73.91

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Query:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC  H SSPP S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL

Query:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C339 F-box protein SNE-like

1.4e-84

100

Show/hide

Query:  MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLL
        MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLL
Subjt:  MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLL

Query:  ATFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        ATFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
Subjt:  ATFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

A0A6J1GK18 F-box protein SNE-like

3.2e-57

74.53

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Query:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC RH SSPP S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL

Query:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

A0A6J1HXD0 F-box protein SNE-like

2.1e-56

73.91

Show/hide

Query:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL
        MQ NA + + K K   K  KFSINDHLD+LTEIL+RLDGPSLCAAACVCRLWCALARNDDSLWEHLC  H SSPP S++R ++LALGGYKRLYMLCLRP+
Subjt:  MQRNAAEKNNKIK-KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPL

Query:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
        L+  N  RS  V RV TLQD +Q LSLSLF VD YER+G + GDAAAAAPSLRFLCKPVNV
Subjt:  LATFNRRRSHFVRRVSTLQDHLQ-LSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

A0A6M2EKB2 F-box domain-containing protein

3.1e-44

64.67

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Query:  KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRR----SH
        K+K  KF INDH+D+L EIL+RLDG SLC +ACVCRLWC +ARN DSLWEHLC RH S PP S +R VV+ALGGYKRLYM+C+RP+L+   R R    S 
Subjt:  KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRR----SH

Query:  FVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
         VRRV T +D +QLSLSLF VD YER GR+ G   A+  SL FLCKPVNV
Subjt:  FVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

B9IAS1 F-box domain-containing protein

3.1e-44

64.67

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Query:  KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRR----SH
        K+K  KF INDH+D+L EIL+RLDG SLC +ACVCRLWC +ARN DSLWEHLC RH S PP S +R VV+ALGGYKRLYM+C+RP+L+   R R    S 
Subjt:  KKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRR----SH

Query:  FVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV
         VRRV T +D +QLSLSLF VD YER GR+ G   A+  SL FLCKPVNV
Subjt:  FVRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

5.2e-12

41.59

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Query:  DVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPS--ALRSVVLALGGYKRLYMLCLRPLL---ATFNRRRSHFVRRVSTLQDHL
        D++ E+LRR +  +L AAACV R W  LA  D+ LWE  C+R  ++   S   LR+VVL+LGG++RL+ + +RPL    A   R++      V   +D +
Subjt:  DVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPS--ALRSVVLALGGYKRLYMLCLRPLL---ATFNRRRSHFVRRVSTLQDHL

Query:  QLSLSLFSVDCYE
        QLSLSLFS+  ++
Subjt:  QLSLSLFSVDCYE

Q9LUB6 F-box protein SNE

3.1e-33

56.05

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Query:  EKNNKIKKKKNF--KFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFN
        EK+N  +++ N    FSINDH DVL EILRRLDG SLC+AACVCRLW A+ARN DS+WE LC R  S  P  +LRSVV ALGGY+ LY LC+RP+LA   
Subjt:  EKNNKIKKKKNF--KFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFN

Query:  RRRSHFVRRVSTLQDHLQLSLSLFSVDCYER--SGRIAGDAAAAAPSLRFLCKPVNV
              + ++   +D LQLSLSL+ V  YER   G   GDA  +  SL FL KPVNV
Subjt:  RRRSHFVRRVSTLQDHLQLSLSLFSVDCYER--SGRIAGDAAAAAPSLRFLCKPVNV

Q9STX3 F-box protein GID2

5.7e-11

35.82

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Query:  NAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASS--PPPSALRSVVLALGGYKRLYMLCLRPLLA
        N   K  K  +++   FS  D  +++ E+L+ +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + LRSVVLALGG++RL+ L L PL  
Subjt:  NAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASS--PPPSALRSVVLALGGYKRLYMLCLRPLLA

Query:  TFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYER
           R R          +D L+L+LSL S+  YE+
Subjt:  TFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYER

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

4.1e-12

35.82

Show/hide

Query:  NAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASS--PPPSALRSVVLALGGYKRLYMLCLRPLLA
        N   K  K  +++   FS  D  +++ E+L+ +D  +L  ++CV ++W   A+ D+ LWE +C RH ++     + LRSVVLALGG++RL+ L L PL  
Subjt:  NAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASS--PPPSALRSVVLALGGYKRLYMLCLRPLLA

Query:  TFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYER
           R R          +D L+L+LSL S+  YE+
Subjt:  TFNRRRSHFVRRVSTLQDHLQLSLSLFSVDCYER

AT5G48170.1 F-box family protein

2.2e-34

56.05

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Query:  EKNNKIKKKKNF--KFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFN
        EK+N  +++ N    FSINDH DVL EILRRLDG SLC+AACVCRLW A+ARN DS+WE LC R  S  P  +LRSVV ALGGY+ LY LC+RP+LA   
Subjt:  EKNNKIKKKKNF--KFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFN

Query:  RRRSHFVRRVSTLQDHLQLSLSLFSVDCYER--SGRIAGDAAAAAPSLRFLCKPVNV
              + ++   +D LQLSLSL+ V  YER   G   GDA  +  SL FL KPVNV
Subjt:  RRRSHFVRRVSTLQDHLQLSLSLFSVDCYER--SGRIAGDAAAAAPSLRFLCKPVNV

Sequences

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CDS sequence

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ATGCAGAGAAATGCAGCCGAGAAGAACAACAAGATCAAGAAGAAGAAGAATTTCAAATTCTCAATCAACGATCACCTCGACGTTCTCACCGAAATCCTCCGGCGACTCGA
CGGCCCCTCCCTCTGCGCCGCCGCCTGCGTCTGCCGCCTCTGGTGTGCCCTAGCCCGCAACGACGATTCCCTCTGGGAGCACCTCTGCCTCCGCCACGCCTCCTCTCCGC
CTCCCTCCGCCCTCCGCTCCGTCGTCCTCGCTCTCGGCGGCTACAAGCGCCTCTACATGCTCTGCCTCCGCCCCCTCCTCGCCACATTCAATCGCCGCCGCTCCCATTTC
GTCCGCCGTGTTTCCACTCTCCAAGATCACCTCCAACTCTCCCTCTCCCTCTTCTCCGTCGATTGTTACGAGAGAAGCGGAAGGATTGCCGGCGATGCGGCGGCGGCGGC
TCCGTCGCTCAGATTCCTCTGTAAACCGGTGAACGTATGA

mRNA sequence

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Protein sequence

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MQRNAAEKNNKIKKKKNFKFSINDHLDVLTEILRRLDGPSLCAAACVCRLWCALARNDDSLWEHLCLRHASSPPPSALRSVVLALGGYKRLYMLCLRPLLATFNRRRSHF
VRRVSTLQDHLQLSLSLFSVDCYERSGRIAGDAAAAAPSLRFLCKPVNV

MS028282 (gene) of Bitter gourd (TR) v1 genome