CuGenDBv2

Gene ID	MS028323
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Genome location	scaffold47:3377720..3378244
RNA-Seq Expression	MS028323
Synteny	MS028323
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-67

83.52

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Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS  +++PL+PKS    AA     TT+    RRREFLSLTASVLAP+W LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVAELRE+SNSWVAKYRKEK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_004136817.1 photosystem II repair protein PSB27-H1, chloroplastic [Cucumis sativus]

1.5e-62

79.55

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Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS    +PL+PKS   +AA+ +P        RRREFLSLTASVLAP++ LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVA+LRE+SN WVAKYRKEKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

2.7e-67

83.52

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Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS  +++PL+PKS  + AA     TT+    RRREFLSLTASVLAP+W LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVAELRE+SNSWVAKYRKEK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_023554625.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

3.5e-67

84.09

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Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS  ++VPL+PKS    AA     TT+    RRREFLSLTASVLAP+W LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVAELRE+SNSWVAKYRKEK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_038887363.1 photosystem II repair protein PSB27-H1, chloroplastic [Benincasa hispida]

1.6e-64

81.25

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Query:  MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS    +PL+PKS  + AA A+ V       RRR+FLSLTASVLAP+W LFP +PALASSD+EYVKDTSEVIGKVR TI MD+NDPNV
Subjt:  MASPTLITP-TSKSHV-LVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVAELRE+SN WVAKYRKEKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

7.3e-63

79.55

Show/hide

Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS    +PL+PKS   +AA+ +P        RRREFLSLTASVLAP++ LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVA+LRE+SN WVAKYRKEKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A1S3C1X2 photosystem II repair protein PSB27-H1, chloroplastic

9.6e-63

78.98

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Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS    +PL+PKS   +AA+ +P        RRR+FLSL+ASVLAP++ LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVA+LRE+SNSWVAKYRKEKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A5A7SR30 Photosystem II repair protein PSB27-H1

9.6e-63

78.98

Show/hide

Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS    +PL+PKS   +AA+ +P        RRR+FLSL+ASVLAP++ LFP +PALA+SD+EYVKDT+EVIGKVRTTI MD+NDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVA+LRE+SNSWVAKYRKEKALL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

1.3e-67

83.52

Show/hide

Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS  +++PL+PKS  + AA     TT+    RRREFLSLTASVLAP+W LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVAELRE+SNSWVAKYRKEK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

1.3e-67

83.52

Show/hide

Query:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV
        MASPTLITP TSKS  +++PL+PKS  + AA     TT+    RRREFLSLTASVLAP+W LFPPAPALASSDEEYVKDT+EVIGKVRTTI MDKNDPNV
Subjt:  MASPTLITP-TSKSH-VLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNV

Query:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AAAVAELRE+SNSWVAKYRKEK+LL RASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

1.4e-47

62.15

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Query:  ASPTLITPTSKSHVLVPLRPKSPAATAAIASPVTTSAQQPR--RREFLSL--TASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPN
        A+ TL+ P         L P  P   A+  SP     ++    RR+FLSL  T+++L  +     PAP  A+ DEEY+KDTS VI KVR+T++M K DPN
Subjt:  ASPTLITPTSKSHVLVPLRPKSPAATAAIASPVTTSAQQPR--RREFLSL--TASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPN

Query:  VAAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VA AVAELRE SNSWVAKYRKEKALL +ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  VAAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

1.0e-48

62.15

Show/hide

Query:  ASPTLITPTSKSHVLVPLRPKSPAATAAIASPVTTSAQQPR--RREFLSL--TASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPN
        A+ TL+ P         L P  P   A+  SP     ++    RR+FLSL  T+++L  +     PAP  A+ DEEY+KDTS VI KVR+T++M K DPN
Subjt:  ASPTLITPTSKSHVLVPLRPKSPAATAAIASPVTTSAQQPR--RREFLSL--TASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPN

Query:  VAAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VA AVAELRE SNSWVAKYRKEKALL +ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  VAAAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

1.2e-04

22.82

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Query:  ATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDE---EYVKDTSEVIGKVRTTINMD-KNDPNVAAAVAELRETSNSWVAKYRKEKA
        A++ +A+   +  Q     E L     V+     LF P     S  E    Y+K   EV+  +R ++  + K++     +    +E+   +++ +R +K 
Subjt:  ATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDE---EYVKDTSEVIGKVRTTINMD-KNDPNVAAAVAELRETSNSWVAKYRKEKA

Query:  LLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL
        +    S+ ++ + + A++  Y   GP+AP+P + K  IL++++ AE+ L
Subjt:  LLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

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ATGGCCTCCCCAACATTGATAACTCCCACTTCCAAATCCCACGTTCTCGTCCCCCTCAGACCCAAATCCCCCGCCGCAACCGCCGCCATTGCCTCCCCCGTCACCACCTC
CGCGCAGCAGCCCCGCCGCCGGGAGTTCCTGTCCCTGACGGCCTCTGTTCTCGCTCCGGCGTGGGCCTTGTTCCCTCCGGCGCCGGCGCTGGCCTCGTCCGACGAGGAGT
ACGTGAAGGACACGAGCGAGGTGATCGGGAAGGTGAGAACGACGATCAACATGGACAAAAACGACCCCAATGTGGCGGCGGCGGTGGCGGAGCTGAGGGAAACTTCCAAT
TCGTGGGTGGCCAAGTACCGGAAGGAGAAGGCCCTGTTGGCCCGGGCCTCTTTCCGGGACATGTACTCGGCGCTCAACGCCGTCTCCGGCCATTACATAAGCTTTGGCCC
GACGGCGCCGATTCCGGCGAAGAGGAAAGCCAGGATTTTGGAAGAGATGGACACTGCTGAGAAGGCTCTGTTGAGAGGAAGATGA

mRNA sequence

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Protein sequence

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MASPTLITPTSKSHVLVPLRPKSPAATAAIASPVTTSAQQPRRREFLSLTASVLAPAWALFPPAPALASSDEEYVKDTSEVIGKVRTTINMDKNDPNVAAAVAELRETSN
SWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

MS028323 (gene) of Bitter gourd (TR) v1 genome