; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028359 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028359
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptioncytochrome c6, chloroplastic
Genome locationscaffold720:163168..166693
RNA-Seq ExpressionMS028359
SyntenyMS028359
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR009056 - Cytochrome c-like domain
IPR023655 - Cytochrome c6
IPR036909 - Cytochrome c-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146690.1 cytochrome c6, chloroplastic [Momordica charantia]1.4e-9099.39Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD
        MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD

Query:  LERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        LERNGAD EEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
Subjt:  LERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

XP_022926876.1 cytochrome c6, chloroplastic [Cucurbita moschata]9.7e-7179.64Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS
        M  LS  SDFS++ HCF +K +R TAVCQ R +Q+KI K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLFS
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS

Query:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        SDLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Subjt:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

XP_023003546.1 cytochrome c6, chloroplastic [Cucurbita maxima]2.6e-7179.64Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS
        M LLS ISDFS++ HCF++K +R T VC+ R +Q+K  K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHDGGGNIIQPGATLFS
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS

Query:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        SDLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Subjt:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

XP_023517564.1 cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]4.8e-7079.04Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS
        M  LS  SDFS++ HCF +K +R TAVCQ R +Q+ I K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLFS
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS

Query:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        SDLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Subjt:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

XP_038877732.1 cytochrome c6, chloroplastic [Benincasa hispida]4.4e-7180.24Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS
        MHLLSA S+F    HCF +K +R T VCQ R  Q+KI  S APPLIAV +ALSP+ +TPGC  LAQT EIERGGALF+Q+CIGCHDGGGNIIQPGATLFS
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS

Query:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        SDLERNGADAEEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVK+QADRGW NP
Subjt:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

TrEMBL top hitse value%identityAlignment
A0A0A0KPD1 Cytochrome c domain-containing protein2.8e-6381.21Show/hide
Query:  IKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHIT
        + G+R T VCQ R  Q+KI K+  PPLIA+L+ LSP+ KT GC  LA+T+EIERGGALF+QSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIY IT
Subjt:  IKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHIT

Query:  YYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        Y GKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Subjt:  YYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

A0A1S3AYD3 cytochrome c6, chloroplastic4.1e-6777.65Show/hide
Query:  MHLLSAISDF--SIAS-HCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGAT
        M LLS  SDF   I+S H F + G R T VCQ R   +KI ++ APPLIA+L+ LSP+ KTPGC  LA+T EIERGGALF+Q+CIGCHDGGGNIIQPGAT
Subjt:  MHLLSAISDF--SIAS-HCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGAT

Query:  LFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        LFSSDLERNGADAEEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Subjt:  LFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

A0A6J1CXZ2 cytochrome c6, chloroplastic7.0e-9199.39Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD
        MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSD

Query:  LERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        LERNGAD EEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
Subjt:  LERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

A0A6J1EG38 cytochrome c6, chloroplastic4.7e-7179.64Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS
        M  LS  SDFS++ HCF +K +R TAVCQ R +Q+KI K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLFS
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS

Query:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        SDLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Subjt:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

A0A6J1KPJ4 cytochrome c6, chloroplastic1.2e-7179.64Show/hide
Query:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS
        M LLS ISDFS++ HCF++K +R T VC+ R +Q+K  K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHDGGGNIIQPGATLFS
Subjt:  MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGC--LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFS

Query:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP
        SDLERNGAD+EEEIY ITYYGKGRMPGFGENCKPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Subjt:  SDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP

SwissProt top hitse value%identityAlignment
P07497 Cytochrome c63.1e-1135Show/hide
Query:  AQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW
        AQ  ++  GG +FS +C  CH GG N++ P  TL  +DL++ G  + E I      GKG MP FG             +L  D+I  +A +V  Q+++GW
Subjt:  AQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW

P0A3X9 Cytochrome c62.0e-1033.33Show/hide
Query:  AVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDE
        A+ IAL  ++ TP  LA   ++  G  +FS +C  CH GGGN++    TL    LE+ G  +E+ I +   +GK  MP             F  RL +++
Subjt:  AVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDE

Query:  IRLLAKFVKIQADRGWS
        I+ +A +V  QA +GW+
Subjt:  IRLLAKFVKIQADRGWS

P25935 Cytochrome c63.1e-1135Show/hide
Query:  AQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW
        AQ  ++  GG +FS +C  CH GG N++ P  TL  +DL++ G  + E I      GKG MP FG             +L  D+I  +A +V  Q+++GW
Subjt:  AQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW

Q93VA3 Cytochrome c6, chloroplastic3.1e-5157.8Show/hide
Query:  LLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIP-------------KSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNI
        +LS  S F+    C       S+     RG++LK P             K  APPL AVL+A+SPI   P  L QT++I+RG  LF+++CIGCHD GGNI
Subjt:  LLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIP-------------KSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNI

Query:  IQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW
        IQPGATLF+ DLERNG D EEEIY +TY+GKGRMPGFGE C PRGQCTFGPRLQ++EI+LLA+FVK QAD+GW
Subjt:  IQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW

Q9F1L9 Cytochrome c62.0e-1033.33Show/hide
Query:  AVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDE
        A+ IAL  ++ TP  LA   ++  G  +FS +C  CH GGGN++    TL    LE+ G  +E+ I +   +GK  MP             F  RL +++
Subjt:  AVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDE

Query:  IRLLAKFVKIQADRGWS
        I+ +A +V  QA +GW+
Subjt:  IRLLAKFVKIQADRGWS

Arabidopsis top hitse value%identityAlignment
AT5G45040.1 Cytochrome c2.2e-5257.8Show/hide
Query:  LLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIP-------------KSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNI
        +LS  S F+    C       S+     RG++LK P             K  APPL AVL+A+SPI   P  L QT++I+RG  LF+++CIGCHD GGNI
Subjt:  LLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIP-------------KSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNI

Query:  IQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW
        IQPGATLF+ DLERNG D EEEIY +TY+GKGRMPGFGE C PRGQCTFGPRLQ++EI+LLA+FVK QAD+GW
Subjt:  IQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTTGGAGTGGCAGTGGCGGCGGCCCAGGCCATGCCTGGCTCCCTGTATGCCACAAGCACAGCCCCAATCTGTCGACTGGATTCGGCTGCTGCGGGTGGCGTGCC
AGGAGCCAAGCATGCCTCCTCACTCACTCCCATTATGCAATATTGCCATCTGCCACTACCTACCGCCATCCATATTTCGCGGCAGCCACATCCTAAACCCGCGAAGGAGA
CAGAGAGAGGGGCTGAGCGAGAGGCCGAAGGGATGCATCTTCTCTCCGCAATTTCAGATTTTAGCATTGCTTCCCATTGCTTCTCAATAAAGGGAGAGCGATCAACCGCT
GTTTGTCAAAAGCGCGGACAGCAACTTAAGATTCCCAAGAGCTTCGCTCCTCCTCTCATTGCTGTGCTGATAGCATTATCTCCTATCACCAAAACCCCAGGATGCCTTGC
CCAAACGGTAGAAATTGAAAGAGGCGGTGCATTGTTTAGCCAATCTTGCATTGGCTGTCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTG
ATCTTGAAAGAAATGGAGCTGATGCGGAAGAGGAGATCTACCATATTACATATTATGGCAAGGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAGTGC
ACATTTGGTCCACGTTTGCAGGAGGATGAGATTAGGCTGTTGGCTAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGTCAAACCCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTTGGAGTGGCAGTGGCGGCGGCCCAGGCCATGCCTGGCTCCCTGTATGCCACAAGCACAGCCCCAATCTGTCGACTGGATTCGGCTGCTGCGGGTGGCGTGCC
AGGAGCCAAGCATGCCTCCTCACTCACTCCCATTATGCAATATTGCCATCTGCCACTACCTACCGCCATCCATATTTCGCGGCAGCCACATCCTAAACCCGCGAAGGAGA
CAGAGAGAGGGGCTGAGCGAGAGGCCGAAGGGATGCATCTTCTCTCCGCAATTTCAGATTTTAGCATTGCTTCCCATTGCTTCTCAATAAAGGGAGAGCGATCAACCGCT
GTTTGTCAAAAGCGCGGACAGCAACTTAAGATTCCCAAGAGCTTCGCTCCTCCTCTCATTGCTGTGCTGATAGCATTATCTCCTATCACCAAAACCCCAGGATGCCTTGC
CCAAACGGTAGAAATTGAAAGAGGCGGTGCATTGTTTAGCCAATCTTGCATTGGCTGTCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCCACACTCTTTTCAAGTG
ATCTTGAAAGAAATGGAGCTGATGCGGAAGAGGAGATCTACCATATTACATATTATGGCAAGGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAGTGC
ACATTTGGTCCACGTTTGCAGGAGGATGAGATTAGGCTGTTGGCTAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGTCAAACCCGTAG
Protein sequenceShow/hide protein sequence
MRVGVAVAAAQAMPGSLYATSTAPICRLDSAAAGGVPGAKHASSLTPIMQYCHLPLPTAIHISRQPHPKPAKETERGAEREAEGMHLLSAISDFSIASHCFSIKGERSTA
VCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPGCLAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYHITYYGKGRMPGFGENCKPRGQC
TFGPRLQEDEIRLLAKFVKIQADRGWSNP