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MS028446 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028446
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold1334:34432..40704
RNA-Seq ExpressionMS028446
SyntenyMS028446
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ29705.1 putative RNA-directed DNA polymerase [Rosa chinensis]1.3e-0839.33Show/hide
Query:  RSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCF
        R +  W+PP+ GWVK+N + +FY  + TGG+ V+ RD     L      + H +S +  EALA +E ++LAI  G+   + ETDSL  F
Subjt:  RSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCF

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]2.1e-0944.09Show/hide
Query:  WQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRPVDD
        W PP   + KVN +A+F   + + GLD+L RDS   VLL+A  +I H + V  AE LA +EG+ LAI+ G+  F +ETDS   F LL    +D
Subjt:  WQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRPVDD

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]1.7e-0846.67Show/hide
Query:  WQPPADGWVKVNTNASFYAASLTGGLDV-LTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDR
        W P  +G  K+ T+ASF +     GL V + RD    VL +AT Y+ H ASVD AEALA  EGL +A++ G+   LLETDSL  + L  R
Subjt:  WQPPADGWVKVNTNASFYAASLTGGLDV-LTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDR

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]2.7e-0938.32Show/hide
Query:  SPIGSLCTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWL
        +P     T  +   W PP     K+NT+ASF A+    GL ++ R+    V+ +AT Y+ +  SVD AEA+   EGL LA  +GV   +LETDS   F L
Subjt:  SPIGSLCTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWL

Query:  LDRPVDD
          +P +D
Subjt:  LDRPVDD

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]5.4e-1034.39Show/hide
Query:  LGAICLSVGSVDFAYQTTHQTCGSFGPTGKLGQDTQHFRSV--TAIRSPIGSL--CTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIV
        +GAI + + ++  A   T Q     G    L   ++++  V   A RS   +L  C    +  W+PPA   +KVN +A+F   S   G+ V+ RDS  +V
Subjt:  LGAICLSVGSVDFAYQTTHQTCGSFGPTGKLGQDTQHFRSV--TAIRSPIGSL--CTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIV

Query:  LLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRP-VDD
         L A   +   + VDW E  A+ EG+ LA++ G   F +ETDSL  F LL    VDD
Subjt:  LLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRP-VDD

TrEMBL top hitse value%identityAlignment
A0A2P6Q699 Putative RNA-directed DNA polymerase6.5e-0939.33Show/hide
Query:  RSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCF
        R +  W+PP+ GWVK+N + +FY  + TGG+ V+ RD     L      + H +S +  EALA +E ++LAI  G+   + ETDSL  F
Subjt:  RSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCF

A0A6J1C467 uncharacterized protein LOC1110077751.0e-0944.09Show/hide
Query:  WQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRPVDD
        W PP   + KVN +A+F   + + GLD+L RDS   VLL+A  +I H + V  AE LA +EG+ LAI+ G+  F +ETDS   F LL    +D
Subjt:  WQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRPVDD

A0A6J1CDQ4 uncharacterized protein LOC1110105338.4e-0946.67Show/hide
Query:  WQPPADGWVKVNTNASFYAASLTGGLDV-LTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDR
        W P  +G  K+ T+ASF +     GL V + RD    VL +AT Y+ H ASVD AEALA  EGL +A++ G+   LLETDSL  + L  R
Subjt:  WQPPADGWVKVNTNASFYAASLTGGLDV-LTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDR

A0A6J1CIF1 uncharacterized protein LOC1110112371.3e-0938.32Show/hide
Query:  SPIGSLCTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWL
        +P     T  +   W PP     K+NT+ASF A+    GL ++ R+    V+ +AT Y+ +  SVD AEA+   EGL LA  +GV   +LETDS   F L
Subjt:  SPIGSLCTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWL

Query:  LDRPVDD
          +P +D
Subjt:  LDRPVDD

A0A6J1DBJ7 uncharacterized protein LOC1110189732.6e-1034.39Show/hide
Query:  LGAICLSVGSVDFAYQTTHQTCGSFGPTGKLGQDTQHFRSV--TAIRSPIGSL--CTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIV
        +GAI + + ++  A   T Q     G    L   ++++  V   A RS   +L  C    +  W+PPA   +KVN +A+F   S   G+ V+ RDS  +V
Subjt:  LGAICLSVGSVDFAYQTTHQTCGSFGPTGKLGQDTQHFRSV--TAIRSPIGSL--CTRRSLYRWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIV

Query:  LLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRP-VDD
         L A   +   + VDW E  A+ EG+ LA++ G   F +ETDSL  F LL    VDD
Subjt:  LLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRP-VDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAGGACCCAAAGAATGAAGATCTCAAGAATGTTGGGATTCCTTGTGATGATCATCCATTCGATGAGAGACGTATAAAGAATCCAAAGGAGCAACAAATCAGCGT
GAATTCTGGAGATACACCACAACATTCTGACGACGAATACCATACGACTCAAAGGCTGTCTTTGCCTGAGACAGCCGAGGGTGACGACGAATCCCTTTCATACTTAGAAG
ATTAGTGCAAATTTCGCGAGATCTCAGAAGACCAAATTTCTGCATCAACACAAAACATTTTAAGTGCTAACTTGCTTCCTAGAGAGGGCTCGCTTCAAGTTCGGTCTTTG
CAACGTCTTCTTATCTATACTAGAGTTTGTGATTTGTTTACAGCTTCGGTTGTTCTGGTTGAACTCGCAATTTGCTCACCTTCGACACTCTTGGCCTGCCCCGTCTATCT
CCTTCTTGCTTGTCGATTTGCAGGAGAGAGTCTATTGGCAGGTTTTTTAGGAGCTATCTGTCTTTCTGTAGGCAGTGTGGATTTCGCGTATCAAACTACACACCAGACGT
GTGGGTCCTTTGGGCCCACTGGGAAGTTGGGACAAGACACTCAGCATTTCCGATCAGTGACGGCGATTCGTTCTCCTATTGGGTCTTTATGTACAAGGCGGAGTTTGTAC
AGATGGCAGCCCCCCGCAGATGGTTGGGTGAAGGTCAATACTAATGCGTCTTTTTATGCAGCTTCTTTGACGGGGGGTTTAGATGTGTTGACTCGTGATTCACATGATAT
TGTACTTCTTGCTGCCACGTTTTATATTCCCCATTGTGCTTCAGTGGATTGGGCAGAGGCTTTGGCGATCAAGGAGGGGTTGGCATTAGCGATTGATATGGGTGTTCGTT
CGTTTCTGCTGGAAACTGATTCCTTATGCTGTTTTTGGTTGTTGGATCGGCCTGTGGATGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGAGGACCCAAAGAATGAAGATCTCAAGAATGTTGGGATTCCTTGTGATGATCATCCATTCGATGAGAGACGTATAAAGAATCCAAAGGAGCAACAAATCAGCGT
GAATTCTGGAGATACACCACAACATTCTGACGACGAATACCATACGACTCAAAGGCTGTCTTTGCCTGAGACAGCCGAGGGTGACGACGAATCCCTTTCATACTTAGAAG
ATTAGTGCAAATTTCGCGAGATCTCAGAAGACCAAATTTCTGCATCAACACAAAACATTTTAAGTGCTAACTTGCTTCCTAGAGAGGGCTCGCTTCAAGTTCGGTCTTTG
CAACGTCTTCTTATCTATACTAGAGTTTGTGATTTGTTTACAGCTTCGGTTGTTCTGGTTGAACTCGCAATTTGCTCACCTTCGACACTCTTGGCCTGCCCCGTCTATCT
CCTTCTTGCTTGTCGATTTGCAGGAGAGAGTCTATTGGCAGGTTTTTTAGGAGCTATCTGTCTTTCTGTAGGCAGTGTGGATTTCGCGTATCAAACTACACACCAGACGT
GTGGGTCCTTTGGGCCCACTGGGAAGTTGGGACAAGACACTCAGCATTTCCGATCAGTGACGGCGATTCGTTCTCCTATTGGGTCTTTATGTACAAGGCGGAGTTTGTAC
AGATGGCAGCCCCCCGCAGATGGTTGGGTGAAGGTCAATACTAATGCGTCTTTTTATGCAGCTTCTTTGACGGGGGGTTTAGATGTGTTGACTCGTGATTCACATGATAT
TGTACTTCTTGCTGCCACGTTTTATATTCCCCATTGTGCTTCAGTGGATTGGGCAGAGGCTTTGGCGATCAAGGAGGGGTTGGCATTAGCGATTGATATGGGTGTTCGTT
CGTTTCTGCTGGAAACTGATTCCTTATGCTGTTTTTGGTTGTTGGATCGGCCTGTGGATGATTAG
Protein sequenceShow/hide protein sequence
MDEDPKNEDLKNVGIPCDDHPFDERRIKNPKEQQISVNSGDTPQHSDDEYHTTQRLSLPETAEGDDESLSYLEDUCKFREISEDQISASTQNILSANLLPREGSLQVRSL
QRLLIYTRVCDLFTASVVLVELAICSPSTLLACPVYLLLACRFAGESLLAGFLGAICLSVGSVDFAYQTTHQTCGSFGPTGKLGQDTQHFRSVTAIRSPIGSLCTRRSLY
RWQPPADGWVKVNTNASFYAASLTGGLDVLTRDSHDIVLLAATFYIPHCASVDWAEALAIKEGLALAIDMGVRSFLLETDSLCCFWLLDRPVDD