; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028477 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028477
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold41:1083879..1087389
RNA-Seq ExpressionMS028477
SyntenyMS028477
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]7.3e-3955.63Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        D L  FGEL+GL AN RKSS F A + +     LA  + F+ G+LPVRYLG+PLL+  L   DC P ++RI S++RSW+ RVLSFA RLQL+R VL+S Q
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
         YWASVF+L A V ++V++IL S+LW+G+E G  G KVAW +VC+P  EGG
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]7.8e-4951.15Show/hide
Query:  FAALPFSEDVIGDDVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFAS
        F+   F      ++VL SFGELAGLVANTRKSSFFG  +PDVEVEQLAAF  FSV S PVRYLGVPL S  LSH DCQP LE+IVSRV SWS R+ SFAS
Subjt:  FAALPFSEDVIGDDVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFAS

Query:  RLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKG--RESGWSGAKVAWSEVCVPLREGGGLYYSRGVYLDCSCFASLLLVLAGYSSEMLFGLW
        RLQLI+ +LQSFQ+  +   +  A +          FL  G   E+      V W  +       G LY    ++               + SEMLF LW
Subjt:  RLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKG--RESGWSGAKVAWSEVCVPLREGGGLYYSRGVYLDCSCFASLLLVLAGYSSEMLFGLW

Query:  FGSQLEMVSVILFGMMLCFWGVRFIRVGRDDVPVWILASSGLFSVSSASDMLRSARPPVP
        F  +LEMVSV+LFGM L FW     +  R+DV VWI  SSGLFSVSSA D+LR  +P VP
Subjt:  FGSQLEMVSVILFGMMLCFWGVRFIRVGRDDVPVWILASSGLFSVSSASDMLRSARPPVP

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]7.8e-4167.13Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        DV  SF +   LV        FG  LP VE ++LAAFL FSV SL VRYLGV LLSR +SH DC+P LERI+ RVR+WS R+LSFAS L LIRLV QSFQ
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEV
         YWASVF+L A+V+HDVEQILHSFLWKG E+GWSG KVAWSE+
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEV

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]1.5e-3956.95Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        + +  FGEL+GL AN  KSS F   +   +  +LAA + FS+G LPVRYLG+PLL   L   DC P ++RI SR+RSWS RVLSFA RLQL+R VL+S Q
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
         YWASVF+L  +V  DV++IL S+LW+G+E G  GAKVAW EVC+P  EGG
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

XP_031740402.1 uncharacterized protein LOC116403409 [Cucumis sativus]6.6e-4056.95Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        + +  FGEL+GL AN  KS  F   +   +  +LAA + FS+G LPVRYLG+PLLSR L   DC P ++RI SR+RSWS RVLSFA RLQL+R VL+S Q
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
         YWASVF+L  +V  DV++IL ++LW+G E G  GAKVAW EVC+P  EGG
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein3.6e-3955.63Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        D L  FGEL+GL AN RKSS F A + +     LA  + F+ G+LPVRYLG+PLL+  L   DC P ++RI S++RSW+ RVLSFA RLQL+R VL+S Q
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
         YWASVF+L A V ++V++IL S+LW+G+E G  G KVAW +VC+P  EGG
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

A0A5A7UV01 F17F8.56.7e-3854.97Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        + L  FGEL+GL AN RKSS F A + +     LAA + F  G+LP+RYLG+PLL+  L   D  P ++RI SR+RSW+ RVLSFA RLQL+R VL+S Q
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
         YWASVF+L A V H+V++IL S+LW+G+E G  G KVAW +VC+P  E G
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

A0A5D3DXE4 Reverse transcriptase domain-containing protein3.6e-3955.63Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        D L  FGEL+GL AN RKSS F A + +     LA  + F+ G+LPVRYLG+PLL+  L   DC P ++RI S++RSW+ RVLSFA RLQL+R VL+S Q
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
         YWASVF+L A V ++V++IL S+LW+G+E G  G KVAW +VC+P  EGG
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

A0A6J1D875 uncharacterized protein LOC1110178113.8e-4951.15Show/hide
Query:  FAALPFSEDVIGDDVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFAS
        F+   F      ++VL SFGELAGLVANTRKSSFFG  +PDVEVEQLAAF  FSV S PVRYLGVPL S  LSH DCQP LE+IVSRV SWS R+ SFAS
Subjt:  FAALPFSEDVIGDDVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFAS

Query:  RLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKG--RESGWSGAKVAWSEVCVPLREGGGLYYSRGVYLDCSCFASLLLVLAGYSSEMLFGLW
        RLQLI+ +LQSFQ+  +   +  A +          FL  G   E+      V W  +       G LY    ++               + SEMLF LW
Subjt:  RLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKG--RESGWSGAKVAWSEVCVPLREGGGLYYSRGVYLDCSCFASLLLVLAGYSSEMLFGLW

Query:  FGSQLEMVSVILFGMMLCFWGVRFIRVGRDDVPVWILASSGLFSVSSASDMLRSARPPVP
        F  +LEMVSV+LFGM L FW     +  R+DV VWI  SSGLFSVSSA D+LR  +P VP
Subjt:  FGSQLEMVSVILFGMMLCFWGVRFIRVGRDDVPVWILASSGLFSVSSASDMLRSARPPVP

A0A6J1DTG0 uncharacterized protein LOC1110241653.8e-4167.13Show/hide
Query:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ
        DV  SF +   LV        FG  LP VE ++LAAFL FSV SL VRYLGV LLSR +SH DC+P LERI+ RVR+WS R+LSFAS L LIRLV QSFQ
Subjt:  DVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAFLSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQ

Query:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEV
         YWASVF+L A+V+HDVEQILHSFLWKG E+GWSG KVAWSE+
Subjt:  AYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEV

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.7e-0934Show/hide
Query:  VPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG
        +P+L + ++       LER+ SR+  W  + LSFA RL L + VL S   +  S  LL   +++ ++Q+  +FLW           V WS+VC P +EGG
Subjt:  VPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPLREGG

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.6e-2347.32Show/hide
Query:  FSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVA
        F+ G+LPVRYLG+PLL++ ++  D  P +E+I  R+  W+ R LSFA RLQLI  V+ S   +W S F L +  + +++ I  SFLW G E     AKVA
Subjt:  FSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVA

Query:  WSEVCVPLREGG
        WS+VC P  EGG
Subjt:  WSEVCVPLREGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGGAAGTTGCGACGTTTTTCTCGATGTTGTATTTTTGGTCACTCGGATGCGACTTGTCATATTCCTTCTACGCGGGTGTGGGTTCCAAAGATTCCTTAAGGTTCA
GCTGAGGCTCCGAAGAGTGCCTGTGGTTTCAAATCTAGGGCGAGATCGGCCTGTTGTTGGTGGAAATCGTTTTGCTGCATTGCCGTTTAGTGAGGATGTTATTGGAGATG
ATGTTTTGACCTCTTTTGGAGAGTTGGCGGGGCTCGTGGCGAATACTCGGAAGAGCTCGTTTTTTGGGGCTTGTCTTCCCGATGTTGAGGTGGAGCAGTTGGCAGCTTTC
TTAAGTTTTTCGGTGGGTTCCCTTCCTGTACGTTATCTCGGGGTCCCACTCCTTTCGCGTTGGCTTTCTCATCGTGATTGTCAGCCTCGGCTTGAACGGATTGTCTCTCG
TGTTCGGAGTTGGTCGACTCGGGTGCTTTCTTTTGCTAGCCGGTTGCAGCTTATTCGGTTGGTTTTGCAGAGTTTTCAGGCTTATTGGGCCAGTGTGTTTCTTCTTCTAG
CTCAGGTTGTTCATGATGTTGAGCAGATTCTGCATTCTTTCTTGTGGAAGGGTCGTGAGAGCGGGTGGTCGGGGGCTAAGGTGGCATGGTCTGAGGTGTGTGTTCCTTTG
CGGGAAGGTGGAGGCTTATATTATTCGAGGGGAGTATATTTGGACTGTTCATGCTTTGCCTCGCTTCTCTTGGTGTTGGCGGGATATTCTTCTGAGATGCTTTTCGGCCT
TTGGTTCGGTTCGCAATTGGAGATGGTCAGCGTTATTTTGTTTGGCATGATGCTTTGCTTCTGGGGGGTCCGATTTATCCGAGTTGGGAGGGACGATGTGCCCGTTTGGA
TTCTGGCGTCGTCGGGTCTTTTCTCGGTGTCGAGTGCGTCGGATATGTTGCGGTCGGCTCGGCCTCCTGTTCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGGAAGTTGCGACGTTTTTCTCGATGTTGTATTTTTGGTCACTCGGATGCGACTTGTCATATTCCTTCTACGCGGGTGTGGGTTCCAAAGATTCCTTAAGGTTCA
GCTGAGGCTCCGAAGAGTGCCTGTGGTTTCAAATCTAGGGCGAGATCGGCCTGTTGTTGGTGGAAATCGTTTTGCTGCATTGCCGTTTAGTGAGGATGTTATTGGAGATG
ATGTTTTGACCTCTTTTGGAGAGTTGGCGGGGCTCGTGGCGAATACTCGGAAGAGCTCGTTTTTTGGGGCTTGTCTTCCCGATGTTGAGGTGGAGCAGTTGGCAGCTTTC
TTAAGTTTTTCGGTGGGTTCCCTTCCTGTACGTTATCTCGGGGTCCCACTCCTTTCGCGTTGGCTTTCTCATCGTGATTGTCAGCCTCGGCTTGAACGGATTGTCTCTCG
TGTTCGGAGTTGGTCGACTCGGGTGCTTTCTTTTGCTAGCCGGTTGCAGCTTATTCGGTTGGTTTTGCAGAGTTTTCAGGCTTATTGGGCCAGTGTGTTTCTTCTTCTAG
CTCAGGTTGTTCATGATGTTGAGCAGATTCTGCATTCTTTCTTGTGGAAGGGTCGTGAGAGCGGGTGGTCGGGGGCTAAGGTGGCATGGTCTGAGGTGTGTGTTCCTTTG
CGGGAAGGTGGAGGCTTATATTATTCGAGGGGAGTATATTTGGACTGTTCATGCTTTGCCTCGCTTCTCTTGGTGTTGGCGGGATATTCTTCTGAGATGCTTTTCGGCCT
TTGGTTCGGTTCGCAATTGGAGATGGTCAGCGTTATTTTGTTTGGCATGATGCTTTGCTTCTGGGGGGTCCGATTTATCCGAGTTGGGAGGGACGATGTGCCCGTTTGGA
TTCTGGCGTCGTCGGGTCTTTTCTCGGTGTCGAGTGCGTCGGATATGTTGCGGTCGGCTCGGCCTCCTGTTCCTTGA
Protein sequenceShow/hide protein sequence
MTGSCDVFLDVVFLVTRMRLVIFLLRGCGFQRFLKVQLRLRRVPVVSNLGRDRPVVGGNRFAALPFSEDVIGDDVLTSFGELAGLVANTRKSSFFGACLPDVEVEQLAAF
LSFSVGSLPVRYLGVPLLSRWLSHRDCQPRLERIVSRVRSWSTRVLSFASRLQLIRLVLQSFQAYWASVFLLLAQVVHDVEQILHSFLWKGRESGWSGAKVAWSEVCVPL
REGGGLYYSRGVYLDCSCFASLLLVLAGYSSEMLFGLWFGSQLEMVSVILFGMMLCFWGVRFIRVGRDDVPVWILASSGLFSVSSASDMLRSARPPVP