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MS028503 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028503
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionS4 RNA-binding domain-containing protein
Genome locationscaffold29:77542..77838
RNA-Seq ExpressionMS028503
SyntenyMS028503
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015860 - purine nucleoside transmembrane transport (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:1904823 - purine nucleobase transmembrane transport (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0005345 - purine nucleobase transmembrane transporter activity (molecular function)
GO:0015211 - purine nucleoside transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB45754.1 hypothetical protein L484_003838 [Morus notabilis]1.5e-1178.95Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPA
        MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP         ARTVERPPA
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPA
GEU50674.1 putative reverse transcriptase domain, ribonuclease H-like domain protein [Tanacetum cinerariifolium]1.5e-1488.24Show/hide
Query:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS
        WVQLDES+KSRSTYVAARMVHRLFLVLA EPK+ RLLPTVLDLRPGI P S
Subjt:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS
KAF5753140.1 hypothetical protein HanXRQr2_MTg0834811 [Helianthus annuus]2.7e-0894.59Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
        MVHRLFLVLAREPKR RLLPTVLDLRPGI PLSNRNQ
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
QHN95475.1 ATP synthase protein [Arachis hypogaea]3.6e-2177.91Show/hide
Query:  VVLLLVWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPA--FRT
        VVLLLVWV LDES+KSR TY+AARMV RLFLVLAREPKR RLLPTVLD RPGI PLSNRNQPP         ARTVERPPA  FRT
Subjt:  VVLLLVWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPA--FRT
YP_009526589.1 hypothetical protein [Ammopiptanthus mongolicus]1.6e-0889.74Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP
        MV RLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP
TrEMBL top hitse value%identityAlignment
A0A385G2D1 Uncharacterized protein7.7e-0989.74Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP
        MV RLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPP
A0A6L2KRZ9 Putative reverse transcriptase domain, ribonuclease H-like domain protein7.1e-1588.24Show/hide
Query:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS
        WVQLDES+KSRSTYVAARMVHRLFLVLA EPK+ RLLPTVLDLRPGI P S
Subjt:  WVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLS
A0A6S7L336 S4 RNA-binding domain-containing protein1.3e-0894.59Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
        MVHRLFLVLAREPKR RLLPTVLDLRPGI PLSNRNQ
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
A0A7S9H536 Uncharacterized protein2.2e-0891.89Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
        MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQ
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQ
W9QPI5 Probable purine permease7.4e-1278.95Show/hide
Query:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPA
        MVHRLF+VLAREPKR RLLPTVLDLRPGI PLSNRNQPP         ARTVERPPA
Subjt:  MVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGATACTTTCAGTTTCGTCGAGCCCCGAGCTTGTGGTCCTCCTTTTAGTGTGGGTTCAATTGGATGAATCTGTCAAGTCAAGGTCAACGTACGTAGCAGCAAGGAT
GGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAAAACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAAC
CACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGAACAGTTGAGCGGCCGCCGGCCTTCCGTACACAGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGATACTTTCAGTTTCGTCGAGCCCCGAGCTTGTGGTCCTCCTTTTAGTGTGGGTTCAATTGGATGAATCTGTCAAGTCAAGGTCAACGTACGTAGCAGCAAGGAT
GGTGCATCGCCTATTTCTCGTTCTCGCTCGGGAGCCAAAACGAAAACGCCTGCTACCTACTGTACTGGACCTTCGACCAGGTATTCGACCCTTGTCGAATCGGAACCAAC
CACCCCACTCTAATAATAGGAGAAAGGAAAACGCTCGAACAGTTGAGCGGCCGCCGGCCTTCCGTACACAGATATAG
Protein sequenceShow/hide protein sequence
MLILSVSSSPELVVLLLVWVQLDESVKSRSTYVAARMVHRLFLVLAREPKRKRLLPTVLDLRPGIRPLSNRNQPPHSNNRRKENARTVERPPAFRTQI