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MS028507 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028507
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionORF-239; putative
Genome locationscaffold29:110466..111136
RNA-Seq ExpressionMS028507
SyntenyMS028507
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3773510.1 hypothetical protein EJ110_NYTH47861 [Nymphaea thermarum]5.1e-1162.5Show/hide
Query:  IPNFLAEVDLPQAHPMDSADTLRLKASIILES-YLDSLTRERYTW-LDVTQSLAQRVSSGDIVTRDDLSMLL
        IPNFLAEVDLPQAHPMDSADTLRLKAS+ILES + DSLTRER TW +D+   + Q         + DL + L
Subjt:  IPNFLAEVDLPQAHPMDSADTLRLKASIILES-YLDSLTRERYTW-LDVTQSLAQRVSSGDIVTRDDLSMLL

KAF3973007.1 hypothetical protein CMV_003551 [Castanea mollissima]1.1e-2448.48Show/hide
Query:  REEGPEFEPDSKRAKLDDETTSSSNLIAPELVPEPEAPLILEKPKRMKFQISQLK--------LKNHIPTQPQIP-NFLAEVDLPQAHPMDSADTLRLKA
        +  GPEF PD     L     S S+   PE +  P     L+K + + F+IS  +          +  P Q QIP  +L +VDLPQ+HPMDSADTLR+KA
Subjt:  REEGPEFEPDSKRAKLDDETTSSSNLIAPELVPEPEAPLILEKPKRMKFQISQLK--------LKNHIPTQPQIP-NFLAEVDLPQAHPMDSADTLRLKA

Query:  SIILESYLD---SLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWELL
        S+ILE + D    + RE+Y+W DV Q+LAQR+S GDIVTR+DLS+L+DQL NPGSE  +KA+ELL
Subjt:  SIILESYLD---SLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWELL

RXH88095.1 hypothetical protein DVH24_042166 [Malus domestica]1.3e-3381.82Show/hide
Query:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWEL
        +LKNHI TQPQIPNFLAEVDLPQAHP+DSADTLRLKA    ESY  DSLTR+RYTWLD+ QSLAQRVSSGDIVTRDD SMLLDQL NPGSE  +KA EL
Subjt:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWEL

RXH92256.1 hypothetical protein DVH24_033152 [Malus domestica]1.6e-2077.78Show/hide
Query:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDI
        KLKNHI  QPQIPNF+A++DLPQAHP+DSA+TLRLKA    ESY  DSLTR+RYTWLD+ QSLAQRVSSGDI
Subjt:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDI

XP_020208959.1 uncharacterized protein LOC109793905 [Cajanus cajan]3.4e-0740.7Show/hide
Query:  QPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLA---QRVSSGDIVTRDDLSMLLDQLHNPGSEN
        +P I N++ +VDLPQ  P D+ + LR K +IILES+  S +R+  TW D+ Q LA   +  ++    TR+D   LL +L+NPG  +
Subjt:  QPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLA---QRVSSGDIVTRDDLSMLLDQLHNPGSEN

TrEMBL top hitse value%identityAlignment
A0A151UGR6 Uncharacterized protein1.7e-0740.7Show/hide
Query:  QPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLA---QRVSSGDIVTRDDLSMLLDQLHNPGSEN
        +P I N++ +VDLPQ  P D+ + LR K +IILES+  S +R+  TW D+ Q LA   +  ++    TR+D   LL +L+NPG  +
Subjt:  QPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLA---QRVSSGDIVTRDDLSMLLDQLHNPGSEN

A0A2P2MW32 Uncharacterized protein3.0e-0942.86Show/hide
Query:  LKNHIPTQPQIP-----NFLAEVDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLA--QRVSSGDIVTRDDLSMLLDQLHNPGSENGMK
        L  H PT+  +P     N++ E DLPQAHP D+ + LR K +IILES+  +  RE  T+LD+ Q LA   + S GD V+R D   LL  L +P +   +K
Subjt:  LKNHIPTQPQIP-----NFLAEVDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLA--QRVSSGDIVTRDDLSMLLDQLHNPGSENGMK

Query:  AWELL
        A E L
Subjt:  AWELL

A0A498J0D7 Uncharacterized protein6.1e-3481.82Show/hide
Query:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWEL
        +LKNHI TQPQIPNFLAEVDLPQAHP+DSADTLRLKA    ESY  DSLTR+RYTWLD+ QSLAQRVSSGDIVTRDD SMLLDQL NPGSE  +KA EL
Subjt:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWEL

A0A498JAU7 Uncharacterized protein7.7e-2177.78Show/hide
Query:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDI
        KLKNHI  QPQIPNF+A++DLPQAHP+DSA+TLRLKA    ESY  DSLTR+RYTWLD+ QSLAQRVSSGDI
Subjt:  KLKNHIPTQPQIPNFLAEVDLPQAHPMDSADTLRLKASIILESYL-DSLTRERYTWLDVTQSLAQRVSSGDI

A0A5K1CTB0 Uncharacterized protein (Fragment)5.3e-1477.42Show/hide
Query:  ASIILES-YLDSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWE
        AS+ILES + DSLTRER TWLDV QSLAQ+VSSGDIVTRDDLSMLLD LHNP SE  + A E
Subjt:  ASIILES-YLDSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAAACACAGCCCTTTCAGTTGCTCTCTACACGGTGACTGTCCTTTTGGGTGTTACCTTATCATATATTTGCCGTAGAGGTTCATTTTCCTCACTCAGGAAACG
AGAAAGGGAGGAGGGCCCTGAATTTGAGCCCGATTCCAAGCGAGCGAAATTGGATGACGAAACAACATCGTCATCTAATCTAATTGCTCCTGAACTCGTCCCTGAGCCTG
AGGCCCCCCTTATACTGGAAAAGCCAAAGAGAATGAAATTTCAGATTAGTCAATTGAAATTGAAGAACCACATCCCGACCCAGCCACAAATCCCGAACTTTTTGGCTGAA
GTCGACCTGCCACAGGCGCATCCGATGGATTCCGCGGATACTTTGCGCTTAAAGGCTTCTATCATTCTGGAGTCGTATTTGGATTCCCTTACTCGTGAGCGATACACCTG
GTTAGACGTAACACAAAGTCTTGCTCAAAGGGTCAGCTCCGGGGATATAGTAACTCGAGATGATCTCAGTATGCTGCTCGACCAGTTGCATAATCCGGGCAGTGAAAACG
GTATGAAAGCCTGGGAGCTCTTAATGTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAAACACAGCCCTTTCAGTTGCTCTCTACACGGTGACTGTCCTTTTGGGTGTTACCTTATCATATATTTGCCGTAGAGGTTCATTTTCCTCACTCAGGAAACG
AGAAAGGGAGGAGGGCCCTGAATTTGAGCCCGATTCCAAGCGAGCGAAATTGGATGACGAAACAACATCGTCATCTAATCTAATTGCTCCTGAACTCGTCCCTGAGCCTG
AGGCCCCCCTTATACTGGAAAAGCCAAAGAGAATGAAATTTCAGATTAGTCAATTGAAATTGAAGAACCACATCCCGACCCAGCCACAAATCCCGAACTTTTTGGCTGAA
GTCGACCTGCCACAGGCGCATCCGATGGATTCCGCGGATACTTTGCGCTTAAAGGCTTCTATCATTCTGGAGTCGTATTTGGATTCCCTTACTCGTGAGCGATACACCTG
GTTAGACGTAACACAAAGTCTTGCTCAAAGGGTCAGCTCCGGGGATATAGTAACTCGAGATGATCTCAGTATGCTGCTCGACCAGTTGCATAATCCGGGCAGTGAAAACG
GTATGAAAGCCTGGGAGCTCTTAATGTCATAA
Protein sequenceShow/hide protein sequence
MEENTALSVALYTVTVLLGVTLSYICRRGSFSSLRKREREEGPEFEPDSKRAKLDDETTSSSNLIAPELVPEPEAPLILEKPKRMKFQISQLKLKNHIPTQPQIPNFLAE
VDLPQAHPMDSADTLRLKASIILESYLDSLTRERYTWLDVTQSLAQRVSSGDIVTRDDLSMLLDQLHNPGSENGMKAWELLMS