CuGenDBv2

Gene ID	MS028525
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	K-box region and MADS-box transcription factor family protein
Genome location	scaffold29:214409..214768
RNA-Seq Expression	MS028525
Synteny	MS028525
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0005739 - mitochondrion (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046436.1 reverse transcriptase [Cucumis melo var. makuwa]

3.3e-61

98.32

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKV SWVWNLGGWVAP NLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

PWA94828.1 hypothetical protein CTI12_AA016510 [Artemisia annua]

1.0e-49

85.71

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKVYSWVWNLGG  + ++ LS    +GGA TPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

YP_009305182.1 hypothetical protein HESP_p38 [Hesperelaea palmeri]

3.0e-46

84.62

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKV SWVW L      R +LSFSSTQGGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKR
        NHSGPGR    S+  KR
Subjt:  NHSGPGRGGDHSQEPKR

YP_009974684.1 hypothetical protein JAA21_mgp17 [Helianthus grosseserratus]

2.2e-49

85.71

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKV SWVWNLGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

YP_009974724.1 hypothetical protein I9989_mgp20 [Helianthus strumosus]

8.5e-49

84.87

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPR DTCTECSYGKV SWVWNLGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

TrEMBL top hits

e value

%identity

Alignment

A0A2U1Q9Z6 Uncharacterized protein

4.9e-50

85.71

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKVYSWVWNLGG  + ++ LS    +GGA TPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A5A7TWJ9 Reverse transcriptase

1.6e-61

98.32

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKV SWVWNLGGWVAP NLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A7G8JSU7 Uncharacterized protein

1.1e-49

85.71

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKV SWVWNLGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A7G8JSY7 Uncharacterized protein

4.1e-49

84.87

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEP DDLSKIRGEIL+S DPFTLPR DTCTECSYGKV SWVWNLGG  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

A0A7N0RCK1 Uncharacterized protein

6.4e-50

87.39

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Query:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
        MNRGEPSDDLSKIRGEILSSGDPFTLPRT TCTECSYGKVYS VWN GG  + ++ LS    +GGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD
Subjt:  MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRD

Query:  NHSGPGRGGDHSQEPKRLS
        NHSGPGRGGDHSQEPKRLS
Subjt:  NHSGPGRGGDHSQEPKRLS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTCACTCTTCCACGGACTGATACATGTACCGAATGCTCATA
CGGGAAAGTTTACTCCTGGGTCTGGAACCTGGGGGGTTGGGTTGCTCCGAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAG
GTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCATCGGGCAGGGATAATCATTCTGGTCCTGGGAGAGGTGGCGAC
CATTCTCAAGAACCAAAAAGACTGAGCTGA

mRNA sequence

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Protein sequence

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MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGD
HSQEPKRLS

MS028525 (gene) of Bitter gourd (TR) v1 genome