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MS028536 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028536
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING/U-box superfamily protein
Genome locationscaffold29:294486..295333
RNA-Seq ExpressionMS028536
SyntenyMS028536
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS28590.1 hypothetical protein Acr_00g0002670 [Actinidia rufa]2.1e-0541.6Show/hide
Query:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC
        KPS G PH  R A+    +      +++ +     DRP      FRR    Q RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LC
Subjt:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC

Query:  CDLHLIPTAGIDLMRPAHYYDEKSP
        C             RP  Y  E  P
Subjt:  CDLHLIPTAGIDLMRPAHYYDEKSP

GFY85168.1 RING/U-box superfamily protein [Actinidia rufa]2.1e-0541.6Show/hide
Query:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC
        KPS G PH  R A+    +      +++ +     DRP      FRR    Q RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LC
Subjt:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC

Query:  CDLHLIPTAGIDLMRPAHYYDEKSP
        C             RP  Y  E  P
Subjt:  CDLHLIPTAGIDLMRPAHYYDEKSP

KAE8663210.1 Detected protein of unknown function [Hibiscus syriacus]1.0e-0473.33Show/hide
Query:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYA
        Q RSS LRAWE    +   SGLNSGPA PSAAR GNGARRGRRYA
Subjt:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYA

KYP33254.1 hypothetical protein KK1_045899 [Cajanus cajan]4.6e-0589.66Show/hide
Query:  LHLIPTAGIDLMRPAHYYDEKSPALFLRY
        LHLIPTAGIDLMRPAHYY EKSPA  LRY
Subjt:  LHLIPTAGIDLMRPAHYYDEKSPALFLRY

TYI32627.1 hypothetical protein ES332_A04G077300v1 [Gossypium tomentosum]2.0e-0858.11Show/hide
Query:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLIPTAGIDLMRPAHYYDEKSP
        Q RSSGLRAWE    +   SGLNSG A PSAARS NGARRGRRYAP LCCD            RP  Y  E  P
Subjt:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLIPTAGIDLMRPAHYYDEKSP

TrEMBL top hitse value%identityAlignment
A0A151QSM8 Uncharacterized protein2.2e-0589.66Show/hide
Query:  LHLIPTAGIDLMRPAHYYDEKSPALFLRY
        LHLIPTAGIDLMRPAHYY EKSPA  LRY
Subjt:  LHLIPTAGIDLMRPAHYYDEKSPALFLRY

A0A5D2QVI1 Uncharacterized protein9.6e-0958.11Show/hide
Query:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLIPTAGIDLMRPAHYYDEKSP
        Q RSSGLRAWE    +   SGLNSG A PSAARS NGARRGRRYAP LCCD            RP  Y  E  P
Subjt:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLIPTAGIDLMRPAHYYDEKSP

A0A6A2X3H8 Uncharacterized protein4.9e-0573.33Show/hide
Query:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYA
        Q RSS LRAWE    +   SGLNSGPA PSAAR GNGARRGRRYA
Subjt:  QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYA

A0A7J0D7M3 Uncharacterized protein9.9e-0641.6Show/hide
Query:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC
        KPS G PH  R A+    +      +++ +     DRP      FRR    Q RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LC
Subjt:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC

Query:  CDLHLIPTAGIDLMRPAHYYDEKSP
        C             RP  Y  E  P
Subjt:  CDLHLIPTAGIDLMRPAHYYDEKSP

A0A7J0EFA7 RING/U-box superfamily protein9.9e-0641.6Show/hide
Query:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC
        KPS G PH  R A+    +      +++ +     DRP      FRR    Q RSSGL AWE    +   SGLNSG   PSAAR GNGARRG  YAP LC
Subjt:  KPS-GPPHRIRNAKAFLLRKETRERKSYAI-----DRP------FRR----QQRSSGLRAWEHSSNKEE-SGLNSGPACPSAARSGNGARRGRRYAPQLC

Query:  CDLHLIPTAGIDLMRPAHYYDEKSP
        C             RP  Y  E  P
Subjt:  CDLHLIPTAGIDLMRPAHYYDEKSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATTCGCCAAGCTGGGGCAAACAAAGCCGTCCGGCCCCCCCCACCGGATTAGGAATGCGAAGGCCTTTCTCCTTCGAAAGGAGACCCGGGAAAGAAAGAGCTATGC
TATTGACCGACCCTTTCGTAGACAACAGAGATCTTCCGGTCTGCGTGCGTGGGAGCACAGCTCAAACAAAGAAGAGTCTGGTCTGAATTCAGGCCCGGCCTGCCCGTCTG
CTGCTAGGTCCGGGAATGGCGCCAGGCGAGGGCGCCGCTATGCCCCGCAGCTCTGCTGCGACCTTCATTTGATTCCGACGGCCGGCATAGATCTCATGAGACCCGCCCAC
TATTACGACGAAAAAAGCCCTGCCCTTTTCCTTCGCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGATTCGCCAAGCTGGGGCAAACAAAGCCGTCCGGCCCCCCCCACCGGATTAGGAATGCGAAGGCCTTTCTCCTTCGAAAGGAGACCCGGGAAAGAAAGAGCTATGC
TATTGACCGACCCTTTCGTAGACAACAGAGATCTTCCGGTCTGCGTGCGTGGGAGCACAGCTCAAACAAAGAAGAGTCTGGTCTGAATTCAGGCCCGGCCTGCCCGTCTG
CTGCTAGGTCCGGGAATGGCGCCAGGCGAGGGCGCCGCTATGCCCCGCAGCTCTGCTGCGACCTTCATTTGATTCCGACGGCCGGCATAGATCTCATGAGACCCGCCCAC
TATTACGACGAAAAAAGCCCTGCCCTTTTCCTTCGCTACTAG
Protein sequenceShow/hide protein sequence
MRFAKLGQTKPSGPPHRIRNAKAFLLRKETRERKSYAIDRPFRRQQRSSGLRAWEHSSNKEESGLNSGPACPSAARSGNGARRGRRYAPQLCCDLHLIPTAGIDLMRPAH
YYDEKSPALFLRY