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MS028553 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028553
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationscaffold29:347358..348218
RNA-Seq ExpressionMS028553
SyntenyMS028553
Gene Ontology termsGO:0000160 - phosphorelay signal transduction system (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEZ10333.1 DNA polymerase-like [Tanacetum cinerariifolium]4.6e-1992.16Show/hide
Query:  SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR
        +YSHSM+M AFGMKMDEQALEPGT+EIRGKHGTGHYTGGARHDRDLRFKYR
Subjt:  SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR

GFS28570.1 hypothetical protein Acr_00g0002560 [Actinidia rufa]2.6e-1470.59Show/hide
Query:  IQLPAL--TLAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARH-DRDLRFKYR
        ++LPA    L A +     HSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGG R     LRFKYR
Subjt:  IQLPAL--TLAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARH-DRDLRFKYR

GFY94550.1 hypothetical protein Acr_09g0009960 [Actinidia rufa]7.6e-1490.7Show/hide
Query:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR
        +  YSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGG R
Subjt:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR

GFY94554.1 hypothetical protein Acr_09g0010000 [Actinidia rufa]7.6e-1490.7Show/hide
Query:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR
        +  YSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGG R
Subjt:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR

PLY94327.1 hypothetical protein LSAT_7X96720 [Lactuca sativa]7.8e-1992.16Show/hide
Query:  SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR
        SYSHSM+   FGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR
Subjt:  SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR

TrEMBL top hitse value%identityAlignment
A0A2J6M494 Uncharacterized protein3.8e-1992.16Show/hide
Query:  SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR
        SYSHSM+   FGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR
Subjt:  SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR

A0A2N9GIJ9 Reverse transcriptase Ty1/copia-type domain-containing protein2.0e-2089.29Show/hide
Query:  LAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFK
        L    + SYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFK
Subjt:  LAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFK

A0A7J0D6W2 Uncharacterized protein1.3e-1470.59Show/hide
Query:  IQLPAL--TLAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARH-DRDLRFKYR
        ++LPA    L A +     HSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGG R     LRFKYR
Subjt:  IQLPAL--TLAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARH-DRDLRFKYR

A0A7J0F784 Uncharacterized protein3.7e-1490.7Show/hide
Query:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR
        +  YSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGG R
Subjt:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR

A0A7J0F794 Uncharacterized protein3.7e-1490.7Show/hide
Query:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR
        +  YSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGG R
Subjt:  YGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCCGGTTACCGGGAACCGCAAGGTTGCAAGGTTCCCAGGAAACGACGTTCCCTTTGTAAAAGCGGAACCTATCTCGACCGCGGAGCGCCGGCTCCGGCCGCCGAT
ACAGTTGCCGGCTCTGACCCTTGCCGCCTATAGATATGGGAGTTACAGTCACTCAATGGAAATGTTCGCCTTTGGAATGAAGATGGATGAGCAGGCACTTGAACCTGGAA
CTGATGAAATTCGGGGGAAACATGGAACCGGTCACTATACTGGGGGGGCGAGACATGACCGCGACTTAAGATTCAAGTACCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGGCCGGTTACCGGGAACCGCAAGGTTGCAAGGTTCCCAGGAAACGACGTTCCCTTTGTAAAAGCGGAACCTATCTCGACCGCGGAGCGCCGGCTCCGGCCGCCGAT
ACAGTTGCCGGCTCTGACCCTTGCCGCCTATAGATATGGGAGTTACAGTCACTCAATGGAAATGTTCGCCTTTGGAATGAAGATGGATGAGCAGGCACTTGAACCTGGAA
CTGATGAAATTCGGGGGAAACATGGAACCGGTCACTATACTGGGGGGGCGAGACATGACCGCGACTTAAGATTCAAGTACCGTTGA
Protein sequenceShow/hide protein sequence
MRPVTGNRKVARFPGNDVPFVKAEPISTAERRLRPPIQLPALTLAAYRYGSYSHSMEMFAFGMKMDEQALEPGTDEIRGKHGTGHYTGGARHDRDLRFKYR