CuGenDBv2

Gene ID	MS028585
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NADH-ubiquinone oxidoreductase chain 5
Genome location	scaffold357:604881..606468
RNA-Seq Expression	MS028585
Synteny	MS028585
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0042773 - ATP synthesis coupled electron transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

CAD1835902.1 unnamed protein product [Ananas comosus var. bracteatus]

6.3e-14

40.61

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Query:  MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA-------------------------------------------------
        M RGRLP   GGGGSSVVGKRETRLYEPEERLHS  +GVKTGAFCSAS NA                                                 
Subjt:  MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA-------------------------------------------------

Query:  ------------------------------------RRILGEAVSGDSPAESRMRGDLHVXGSGQ
                                            RRILGEAVSGDSPAESRMRGD HV   G+
Subjt:  ------------------------------------RRILGEAVSGDSPAESRMRGDLHVXGSGQ

KAF9626616.1 hypothetical protein IFM89_036477 [Coptis chinensis]

2.3e-16

92.16

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNARRI
        MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA R+
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNARRI

KAG6383881.1 hypothetical protein SASPL_156294 [Salvia splendens]

1.5e-15

95.83

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

PPS15510.1 hypothetical protein GOBAR_AA05069 [Gossypium barbadense]

3.1e-13

87.5

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        +TRGRLPGGGGSSVVGKRETRLYEP+ERLHSSSKG+K  AFCSAS NA
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

TKS02723.1 NADH dehydrogenase subunit 5 [Populus alba]

8.8e-16

97.92

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSAS NA
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

TrEMBL top hits

e value

%identity

Alignment

A0A2P5YIU1 Uncharacterized protein

1.5e-13

87.5

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        +TRGRLPGGGGSSVVGKRETRLYEP+ERLHSSSKG+K  AFCSAS NA
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

A0A4D8YAI0 NADH-ubiquinone oxidoreductase chain 5

7.3e-16

95.83

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

A0A4U5PYN4 NADH dehydrogenase subunit 5

4.3e-16

97.92

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Query:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSAS NA
Subjt:  MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

A0A6V7PYE1 Uncharacterized protein

3.0e-14

40.61

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Query:  MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA-------------------------------------------------
        M RGRLP   GGGGSSVVGKRETRLYEPEERLHS  +GVKTGAFCSAS NA                                                 
Subjt:  MTRGRLP---GGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA-------------------------------------------------

Query:  ------------------------------------RRILGEAVSGDSPAESRMRGDLHVXGSGQ
                                            RRILGEAVSGDSPAESRMRGD HV   G+
Subjt:  ------------------------------------RRILGEAVSGDSPAESRMRGDLHVXGSGQ

A0A7J0FM97 NADH-ubiquinone oxidoreductase chain 5

2.9e-12

95.24

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Query:  PGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA
        PGGGGSSVVGKRETRLYEPEERLHSSS+GVKTGAFCSAS NA
Subjt:  PGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACCCGTGGCCGCCTGCCTGGTGGGGGCGGCTCCTCCGTTGTGGGTAAACGGGAAACCCGACTCTACGAACCCGAGGAAAGGCTGCACAGCAGTAGTAAGGGCGTTAA
GACCGGAGCTTTTTGTAGTGCTAGCAGTAATGCAAGGAGGATATTAGGGGAAGCAGTGAGTGGAGATTCCCCTGCAGAGAGCCGGATGAGGGGAGACCTTCACGTCCNCG
GGAGTGGACAGCAAGTTGGAGGACGCTGCAGAACCGCGTGATTGATCCATCTGCGCCATTCCCTAATTGAAGCAAGTTGGAAAGCCTTCAGAGCCTCAGCCCATAAAAGC
AGAAAGAAGGAAAAAAAACTGATGAAAGTCAGCCTGGACTCTCGAATCTTTTGCTTCTCGGATAGCGGCGAACAATGCAGCTTGCGTTGCGGGAGATGCCCGCTTCTCGC
CCGAAAGAACCGCTCACTAGCTAGCCGGACTAGTGGGGGCCATTCGTTTGATGAGAAAGAAAAATGAATATCGAAAATTCGAGTGGCTGAAGCTGAAGCAGCTACTTTCG
AAATAACACTCATTTAGCTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTATTGGCGGCTTCAAACTCTTTCCTAGTCTAGTAGTGGTTCGGATCTTGACCGGG
TCTGAGCTTCCCAAGCTCTATGCTGTTGGGGAACTCCGCTTCAGACCTATGATGGTGACCACATCTGCTGGCATGTGA

mRNA sequence

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Protein sequence

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MTRGRLPGGGGSSVVGKRETRLYEPEERLHSSSKGVKTGAFCSASSNARRILGEAVSGDSPAESRMRGDLHVXGSGQQVGGRCRTAULIHLRHSLIEASWKAFRASAHKS
RKKEKKLMKVSLDSRIFCFSDSGEQCSLRCGRCPLLARKNRSLASRTSGGHSFDEKEKUISKIRVAEAEAATFEITLIULLHAYYNULFRFSIGGFKLFPSLVVVRILTG
SELPKLYAVGELRFRPMMVTTSAGM

MS028585 (gene) of Bitter gourd (TR) v1 genome