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MS028605 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028605
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold78:274372..274716
RNA-Seq ExpressionMS028605
SyntenyMS028605
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ESR35143.1 hypothetical protein CICLE_v10007098mg, partial [Citrus clementina]3.5e-0733.04Show/hide
Query:  LLASSYVAHVVG-VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        + AS+Y     G ++LAE  A+  GI+LA ++ L P V+E DS  +  L+  + +   E+   +  I A   K+ + +   + R  N VAHK+VK  L  
Subjt:  LLASSYVAHVVG-VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

Query:  AVDSIWLEERPP
        +   IW++E PP
Subjt:  AVDSIWLEERPP

TXG56465.1 hypothetical protein EZV62_017778 [Acer yangbiense]3.5e-0730.97Show/hide
Query:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        M +   Y+       +AE  A+  G+RLA+   +FPC ++ D+  +   ++ +     EVG ++G I  +  +   +S  FV R+ N++AH + K GL  
Subjt:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

Query:  AVDSIWLEERPPY
        A +  WLEE P Y
Subjt:  AVDSIWLEERPPY

TXG66648.1 hypothetical protein EZV62_007923 [Acer yangbiense]3.5e-0730.93Show/hide
Query:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKSAVDSIWLEERPP
        +AE +A+  G++  RE  L+PC+++ DS  + +L+ F    ++++G F+  I  +    + +   FV R     AH + K GL    D+ W+EE PP
Subjt:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKSAVDSIWLEERPP

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]7.0e-0837.11Show/hide
Query:  ASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        A+ Y+ HV  VD AE +A   G+R+A E  + P +LE DS RI NL   +   + + G  +  +K      + VS  F KR GN +AH + +R L+S
Subjt:  ASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]1.3e-0936.04Show/hide
Query:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        M  A+ Y+ ++  VD+AE +    G++LA ++ + P +LE DS RI NL    + D+ E G  V   K    + +  S  FVKR GN+ AH + +R L  
Subjt:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

Query:  AVDSIWLEERP
           SIW+E+ P
Subjt:  AVDSIWLEERP

TrEMBL top hitse value%identityAlignment
A0A5C7HI89 Protein kinase domain-containing protein1.7e-0730.97Show/hide
Query:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        M +   Y+       +AE  A+  G+RLA+   +FPC ++ D+  +   ++ +     EVG ++G I  +  +   +S  FV R+ N++AH + K GL  
Subjt:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

Query:  AVDSIWLEERPPY
        A +  WLEE P Y
Subjt:  AVDSIWLEERPPY

A0A5C7IC42 Uncharacterized protein1.7e-0730.93Show/hide
Query:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKSAVDSIWLEERPP
        +AE +A+  G++  RE  L+PC+++ DS  + +L+ F    ++++G F+  I  +    + +   FV R     AH + K GL    D+ W+EE PP
Subjt:  LAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKSAVDSIWLEERPP

A0A6J1CDQ4 uncharacterized protein LOC1110105333.4e-0837.11Show/hide
Query:  ASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        A+ Y+ HV  VD AE +A   G+R+A E  + P +LE DS RI NL   +   + + G  +  +K      + VS  F KR GN +AH + +R L+S
Subjt:  ASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

A0A6J1CIF1 uncharacterized protein LOC1110112376.2e-1036.04Show/hide
Query:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        M  A+ Y+ ++  VD+AE +    G++LA ++ + P +LE DS RI NL    + D+ E G  V   K    + +  S  FVKR GN+ AH + +R L  
Subjt:  MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

Query:  AVDSIWLEERP
           SIW+E+ P
Subjt:  AVDSIWLEERP

V4RLS8 RNase H domain-containing protein (Fragment)1.7e-0733.04Show/hide
Query:  LLASSYVAHVVG-VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS
        + AS+Y     G ++LAE  A+  GI+LA ++ L P V+E DS  +  L+  + +   E+   +  I A   K+ + +   + R  N VAHK+VK  L  
Subjt:  LLASSYVAHVVG-VDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKS

Query:  AVDSIWLEERPP
        +   IW++E PP
Subjt:  AVDSIWLEERPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTTGGCTTCTTCATATGTAGCACATGTGGTAGGTGTTGATCTGGCAGAGGATATGGCGGTGAACTTTGGAATTCGGCTAGCTCGGGAGATGGCTTTGTTTCCGTG
TGTTTTGGAAATGGATTCATACCGTATCTCCAACCTATTGCAATTTGAAACTCATGATATTTTTGAGGTTGGTCATTTTGTTGGGATGATAAAGGCTATGGAGTTGAAGG
AGGTGGTGGTGTCTACCGGTTTTGTCAAGAGGAGAGGGAATGAGGTGGCTCACAAGATAGTTAAAAGAGGTTTGAAGTCTGCTGTTGATTCCATCTGGTTGGAGGAACGG
CCCCCTTATTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTTTGGCTTCTTCATATGTAGCACATGTGGTAGGTGTTGATCTGGCAGAGGATATGGCGGTGAACTTTGGAATTCGGCTAGCTCGGGAGATGGCTTTGTTTCCGTG
TGTTTTGGAAATGGATTCATACCGTATCTCCAACCTATTGCAATTTGAAACTCATGATATTTTTGAGGTTGGTCATTTTGTTGGGATGATAAAGGCTATGGAGTTGAAGG
AGGTGGTGGTGTCTACCGGTTTTGTCAAGAGGAGAGGGAATGAGGTGGCTCACAAGATAGTTAAAAGAGGTTTGAAGTCTGCTGTTGATTCCATCTGGTTGGAGGAACGG
CCCCCTTATTTTTAA
Protein sequenceShow/hide protein sequence
MLLASSYVAHVVGVDLAEDMAVNFGIRLAREMALFPCVLEMDSYRISNLLQFETHDIFEVGHFVGMIKAMELKEVVVSTGFVKRRGNEVAHKIVKRGLKSAVDSIWLEER
PPYF