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MS028609 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028609
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold78:634744..635388
RNA-Seq ExpressionMS028609
SyntenyMS028609
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RYQ93089.1 hypothetical protein Ahy_B09g099349 [Arachis hypogaea]2.3e-1239.29Show/hide
Query:  GVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDG
        GV V+IRDS GLV       +A A  V   E FA Y+G+ +A +  F+  +IE D++ + N L  +       GT+ S  K  L    R+   S  +R+ 
Subjt:  GVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDG

Query:  NAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS
        N+ AH LA+LALT P+L +W+EE P E  L L V C S S
Subjt:  NAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS

XP_016173756.1 uncharacterized protein LOC107616295 [Arachis ipaensis]2.3e-1239.29Show/hide
Query:  GVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDG
        GV V+IRDS GLV       +A A  V   E FA Y+G+ +A +  F+  +IE D++ + N L  +       GT+ S  K  L    R+   S  +R+ 
Subjt:  GVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDG

Query:  NAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS
        N+ AH LA+LALT P+L +W+EE P E  L L V C S S
Subjt:  NAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]3.4e-2443.06Show/hide
Query:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV
        +F+K +F  G+ ++IRDS   V L+ +  +    DV   E  A  EG+ LA+EAG I FQIETDS ++FNLL  DC D+ E+G L S I+  +SS     
Subjt:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV

Query:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVD
         FSF  R+GN+ AH LA++ + S    +WVEEW  ++S ++A D
Subjt:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVD

XP_022140628.1 uncharacterized protein LOC111011237 [Momordica charantia]9.4e-1435.86Show/hide
Query:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV
        SF       G+ +IIR+  G V  +  + L   + VD  E     EG+ LA + G     +ETDS RIFNL +    D  E G +    K F  +     
Subjt:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV

Query:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDC
        SF+F +R+GN AAH+LA+ AL      IW+E+WP E+   L ++C
Subjt:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDC

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.6e-6184.56Show/hide
Query:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV
        +F+KESFV GV VIIRDS GLVYLT +R LARA DVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLT DCVDD EVG L SVIKLFLSSH   V
Subjt:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV

Query:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS
        SFSFT R+GNA AHLLAQLALTSPHLQIWVEEWPDEIS +LAVDC S S
Subjt:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS

TrEMBL top hitse value%identityAlignment
A0A444XTI4 RNase H domain-containing protein1.1e-1239.29Show/hide
Query:  GVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDG
        GV V+IRDS GLV       +A A  V   E FA Y+G+ +A +  F+  +IE D++ + N L  +       GT+ S  K  L    R+   S  +R+ 
Subjt:  GVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDG

Query:  NAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS
        N+ AH LA+LALT P+L +W+EE P E  L L V C S S
Subjt:  NAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS

A0A6J1C467 uncharacterized protein LOC1110077751.7e-2443.06Show/hide
Query:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV
        +F+K +F  G+ ++IRDS   V L+ +  +    DV   E  A  EG+ LA+EAG I FQIETDS ++FNLL  DC D+ E+G L S I+  +SS     
Subjt:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV

Query:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVD
         FSF  R+GN+ AH LA++ + S    +WVEEW  ++S ++A D
Subjt:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVD

A0A6J1CIF1 uncharacterized protein LOC1110112374.5e-1435.86Show/hide
Query:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV
        SF       G+ +IIR+  G V  +  + L   + VD  E     EG+ LA + G     +ETDS RIFNL +    D  E G +    K F  +     
Subjt:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV

Query:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDC
        SF+F +R+GN AAH+LA+ AL      IW+E+WP E+   L ++C
Subjt:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDC

A0A6J1DBJ7 uncharacterized protein LOC1110189737.6e-6284.56Show/hide
Query:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV
        +F+KESFV GV VIIRDS GLVYLT +R LARA DVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLT DCVDD EVG L SVIKLFLSSH   V
Subjt:  SFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWV

Query:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS
        SFSFT R+GNA AHLLAQLALTSPHLQIWVEEWPDEIS +LAVDC S S
Subjt:  SFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS

A0A803LHG6 Uncharacterized protein1.5e-1235.46Show/hide
Query:  VGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRD
        VG   ++RD+VG V       +    DVD VE  A+   + +A+E+GF+R  +ETD+L++ + L     D    G +   I L L+S      F F +R+
Subjt:  VGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVYEGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRD

Query:  GNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS
        GN  AH LA+L+ T   L++W+EE+P  I  ++  D SS S
Subjt:  GNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCGTAATCAAACTCCCCAACATTTCTCGTTGGGTGGCCTTTTGTCGGACATTGTTTCTTGGTCGGAAAATTACCTCGAGTTTATCAAGCGGCTCAACGGAGTTCTG
CGTCTGCTCCAGTGGTTTCTCGTCCACCTCGGGTGTCTTTCTGGTGTCCTTTTGCAGCGCCTCTCCTCAAGGTGAATGTGGATGCAGCTTTCAGAAAGAATCTTTTGTAG
TAGGGGTGAGTGTAATTATTCGGGATTCGGTCGGTCTTGTGTATCTTACGGTCGTTCGTCCGCTTGCTCGTGCTCGTGATGTTGATTGGGTGGAAGGCTTTGCGGTTTAT
GAGGGTATTCTCCTTGCTGTGGAAGCAGGTTTTATTCGGTTCCAGATCGAAACAGATTCACTACGGATTTTTAATTTACTGACGATAGATTGTGTGGATGATTTTGAAGT
TGGGACTCTCTACTCTGTCATCAAGCTTTTTTTGTCTTCTCATGGTAGGTGGGTTTCTTTTAGTTTTACACGTAGGGACGGTAATGCTGCAGCCCATCTGTTAGCTCAAC
TGGCATTGACTTCACCACACCTTCAAATCTGGGTGGAGGAATGGCCTGATGAGATCTCTTTGATGTTGGCGGTGGATTGTAGTTCCTGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGCGTAATCAAACTCCCCAACATTTCTCGTTGGGTGGCCTTTTGTCGGACATTGTTTCTTGGTCGGAAAATTACCTCGAGTTTATCAAGCGGCTCAACGGAGTTCTG
CGTCTGCTCCAGTGGTTTCTCGTCCACCTCGGGTGTCTTTCTGGTGTCCTTTTGCAGCGCCTCTCCTCAAGGTGAATGTGGATGCAGCTTTCAGAAAGAATCTTTTGTAG
TAGGGGTGAGTGTAATTATTCGGGATTCGGTCGGTCTTGTGTATCTTACGGTCGTTCGTCCGCTTGCTCGTGCTCGTGATGTTGATTGGGTGGAAGGCTTTGCGGTTTAT
GAGGGTATTCTCCTTGCTGTGGAAGCAGGTTTTATTCGGTTCCAGATCGAAACAGATTCACTACGGATTTTTAATTTACTGACGATAGATTGTGTGGATGATTTTGAAGT
TGGGACTCTCTACTCTGTCATCAAGCTTTTTTTGTCTTCTCATGGTAGGTGGGTTTCTTTTAGTTTTACACGTAGGGACGGTAATGCTGCAGCCCATCTGTTAGCTCAAC
TGGCATTGACTTCACCACACCTTCAAATCTGGGTGGAGGAATGGCCTGATGAGATCTCTTTGATGTTGGCGGTGGATTGTAGTTCCTGTTCTTAA
Protein sequenceShow/hide protein sequence
MRVIKLPNISRWVAFCRTLFLGRKITSSLSSGSTEFCVCSSGFSSTSGVFLVSFCSASPQGECGCSFQKESFVVGVSVIIRDSVGLVYLTVVRPLARARDVDWVEGFAVY
EGILLAVEAGFIRFQIETDSLRIFNLLTIDCVDDFEVGTLYSVIKLFLSSHGRWVSFSFTRRDGNAAAHLLAQLALTSPHLQIWVEEWPDEISLMLAVDCSSCS