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MS028631 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028631
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold101:89308..89826
RNA-Seq ExpressionMS028631
SyntenyMS028631
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012851712.1 PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata]6.0e-1130.41Show/hide
Query:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEM--
        G PFTW+N RH  + +  RLDR   NN  + LFP+  + +L ++ SDH  I+  L  + +  Q  +  +PFRFE  W    +C ++I     WA+ +   
Subjt:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEM--

Query:  ETQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPY-PLDFVKISAIEMELDKYLEDEEIY
          + L    N    AL  W +   ++   HI  L   I+E  E         +IS +   L+K  ED ++Y
Subjt:  ETQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPY-PLDFVKISAIEMELDKYLEDEEIY

XP_021738180.1 uncharacterized protein LOC110704669 [Chenopodium quinoa]3.2e-1229.55Show/hide
Query:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEMET
        G  FTWNN R G + I +RLDRFL N    DLF    + +L+  +SDH  I  C+   I   +K K  K F FEE+W  +  C  +I     W+D     
Subjt:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEMET

Query:  QSLNAHLNGSEAALKKW--------GREVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY
           +++++ + + L+ W         +E+     N   +++ T K+E          K+ AI+  +D+  E EE++
Subjt:  QSLNAHLNGSEAALKKW--------GREVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY

XP_021807878.1 uncharacterized protein LOC110751684 [Prunus avium]3.5e-1130.17Show/hide
Query:  MESLGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADW
        M + G PFTW N  H    I++RLDR L N   M L+P  ++ NL   RSDH  I    + ++      ++ + FRFE +W  H +  +++         
Subjt:  MESLGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADW

Query:  EMETQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEW-------PYPLDFVKISAIEMELDKYLEDEEIY
            Q +    N  +  LK W R V   +F  I   + T++   E        PY LD  K S +  EL   LE EE +
Subjt:  EMETQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEW-------PYPLDFVKISAIEMELDKYLEDEEIY

XP_022158772.1 uncharacterized protein LOC111025237 [Momordica charantia]1.2e-1145.45Show/hide
Query:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIA
        G  FTW N R   +Q+ + LDRFLCN++   LFP   I +L W++SDHRAI   L   +   Q  +  KP RFEE W  +PEC +LI+
Subjt:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIA

XP_030486783.1 uncharacterized protein LOC115703685 [Cannabis sativa]6.0e-1129.07Show/hide
Query:  MESLGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADW
        M  +G PFTW   R+  E I +RLD+ L  N+ + +FP+  + NL+++ SDH  +     GNI         + FRFE  W   P C +L+   G W   
Subjt:  MESLGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADW

Query:  EMETQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY
         + T     H  G    L +WGR++       IS  K  I+       P+   +    + +L + L  +EI+
Subjt:  EMETQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY

TrEMBL top hitse value%identityAlignment
A0A2N9EK24 CCHC-type domain-containing protein1.5e-1230.29Show/hide
Query:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEMET
        G  FTW N R G E++ +RLDR LC      +FP+ Q+++L  A SDH A+   +  ++      K  +P RFEE WT  PEC ++I    +        
Subjt:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEMET

Query:  QSLNAHLNGSEAALKKWGR-------EVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY
          L+  + G +  L  W R       E+ +   NH+  L+L      E         +     EL + +E EEIY
Subjt:  QSLNAHLNGSEAALKKWGR-------EVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY

A0A2N9GJA3 Uncharacterized protein2.6e-1233.33Show/hide
Query:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEME-
        G  FTW N R G + I +RLDR + N     LFPK  I +L    SDH  +    + +I  G      KPFRFEE WT    C  +I     W D     
Subjt:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEME-

Query:  -TQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDF-----VKISAIEMELDKYLEDEEI
          QSL+  +   +  LK W    NK +F  I    + +K+E E    LD      +K   ++ E D+ L  EE+
Subjt:  -TQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDF-----VKISAIEMELDKYLEDEEI

A0A2N9HN58 Uncharacterized protein2.6e-1233.33Show/hide
Query:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEME-
        G  FTW N R G + I +RLDR + N     LFPK  I +L    SDH  +    + +I  G      KPFRFEE WT    C  +I     W D     
Subjt:  GEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEME-

Query:  -TQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDF-----VKISAIEMELDKYLEDEEI
          QSL+  +   +  LK W    NK +F  I    + +K+E E    LD      +K   ++ E D+ L  EE+
Subjt:  -TQSLNAHLNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDF-----VKISAIEMELDKYLEDEEI

A0A803M8Y9 Uncharacterized protein3.4e-1238.89Show/hide
Query:  LGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIAS
        +G PFTW N R G   + +RLDR+L N    +LFP   +++L   +SDH  I  C+N  +   +K K  K +RFEE+W     CG+++A+
Subjt:  LGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIAS

A0A803MS51 Uncharacterized protein3.4e-1233.88Show/hide
Query:  LGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEME
        +G  FTW+N R G E I +RLDR+L N+   DLFP   +++L   +SDH  I  C+   +   +K K  K +RFE +W     C E+++       WE  
Subjt:  LGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEME

Query:  TQSLNAHLNGSEAALKKWGRE
         + L + +  + + L  W RE
Subjt:  TQSLNAHLNGSEAALKKWGRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGCTTGGGGGAGCCGTTTACATGGAATAACATAAGACATGGATATGAGCAGATTCACCAAAGGTTGGATAGGTTTCTCTGCAACAACGCTTCCATGGATCTTTT
CCCTAAATATCAAATAAACAACTTACAGTGGGCGAGATCGGACCATAGGGCTATTGAATGTTGTCTAAATGGCAACATAGAGGGTGGGCAAAAAGCAAAGTTAGTGAAGC
CTTTTAGGTTTGAGGAGGTGTGGACAGGACATCCAGAATGTGGGGAGCTGATTGCAAGTGGTGGTAGGTGGGCGGATTGGGAGATGGAGACGCAATCTTTGAATGCACAT
CTGAACGGTTCTGAGGCGGCATTGAAGAAGTGGGGTAGGGAGGTGAATAAGAAGATGTTTAATCACATTAGTATTTTGAAACTAACAATTAAAGAAGAGTATGAGTGGCC
TTACCCTTTGGATTTTGTTAAAATAAGTGCAATAGAGATGGAACTAGATAAGTATCTGGAGGATGAAGAAATTTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGCTTGGGGGAGCCGTTTACATGGAATAACATAAGACATGGATATGAGCAGATTCACCAAAGGTTGGATAGGTTTCTCTGCAACAACGCTTCCATGGATCTTTT
CCCTAAATATCAAATAAACAACTTACAGTGGGCGAGATCGGACCATAGGGCTATTGAATGTTGTCTAAATGGCAACATAGAGGGTGGGCAAAAAGCAAAGTTAGTGAAGC
CTTTTAGGTTTGAGGAGGTGTGGACAGGACATCCAGAATGTGGGGAGCTGATTGCAAGTGGTGGTAGGTGGGCGGATTGGGAGATGGAGACGCAATCTTTGAATGCACAT
CTGAACGGTTCTGAGGCGGCATTGAAGAAGTGGGGTAGGGAGGTGAATAAGAAGATGTTTAATCACATTAGTATTTTGAAACTAACAATTAAAGAAGAGTATGAGTGGCC
TTACCCTTTGGATTTTGTTAAAATAAGTGCAATAGAGATGGAACTAGATAAGTATCTGGAGGATGAAGAAATTTACTAG
Protein sequenceShow/hide protein sequence
MESLGEPFTWNNIRHGYEQIHQRLDRFLCNNASMDLFPKYQINNLQWARSDHRAIECCLNGNIEGGQKAKLVKPFRFEEVWTGHPECGELIASGGRWADWEMETQSLNAH
LNGSEAALKKWGREVNKKMFNHISILKLTIKEEYEWPYPLDFVKISAIEMELDKYLEDEEIY