; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028650 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028650
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold378:290701..291888
RNA-Seq ExpressionMS028650
SyntenyMS028650
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]1.3e-6936.34Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L RWKR  LS+GGRLTL  +VL SIP YY+SLF+MP G+  K+E+ +RNF W    +G   HLVRW   +   E+GGLGIG+L +RN AL AKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS
         +ET++LW ++I S YG+    W        S R+PW  I K ++   +   F V NG ++ FW   WL +  LKD F  L+ +      + C AW +++
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS

Query:  S----SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTA
             +W  + RRNL + E  E + LL  L +V L     DR  W++E  GSFS  S      + + +       +WK+++P ++    W+  NG++NT 
Subjt:  S----SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTA

Query:  EILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
        + +Q++ P MC+ PS CV C  + E+  H F  C Y+   W  + +     W +      +++  L       KA +L    + AI   +W ERN+RIF
Subjt:  EILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

CAN75156.1 hypothetical protein VITISV_042643 [Vitis vinifera]1.4e-6839.04Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L  WK+  LS GGR+TL  S L  IP Y+LSLF++P  I  K+EK  R+F W    +G  +HL+RW + S   E GGLG G  + RN+ALL KW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEA-WDSD
          E S LW +VIASIYG     W A      S+R PW  I + +          V NG R+ FW  LW G+ TL  +F  L+RV S    +V     +S 
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEA-WDSD

Query:  SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQ-EDEDRVMWKLESSGSFSVASLCKP-CKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEI
          SW    RRNL D E +    L+S L+SV L     D   W L SSGSFSV S      K+++ +       LW S+ P +V  L+W++ +GKVNT + 
Subjt:  SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQ-EDEDRVMWKLESSGSFSVASLCKP-CKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEI

Query:  LQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
        LQ + P   + P  C+LC  +GES  H F  CP     W  LFNL  + W     + +++     G   S +  +LW      +I  +W ERN RIF
Subjt:  LQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

KAB2623078.1 ribonuclease H protein [Pyrus ussuriensis x Pyrus communis]1.1e-7138.94Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L  WK+  LSRGGRLTL  SVLGS+P+YY+SLF++P G+  +LEK ++ F W    +G  NHLV+W I     E+GGLG+GNL  +N ALLAKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS
          E ++LW +VI + YG+    W A     GS+RSPW +I        +   FKV NG RV  W   WL    LK++F  LF +      ++    D   
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS

Query:  S--SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTD-GQCSRLWKSRSPKRVNILSWILINGKVNTAE
        +  SW  + RRNL + E EE   LL  + +V L Q   D   WKL+ SG F+  S      N  ++      S++WKS+ P +V +L W++  G++NT +
Subjt:  S--SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTD-GQCSRLWKSRSPKRVNILSWILINGKVNTAE

Query:  ILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
         +Q++SP +CI P  C LC A  ES  H F  C Y    W  LF    +SW +      +++       +  KA  LW   V A+   +W ERN+RIF
Subjt:  ILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

RVX04562.1 putative ribonuclease H protein [Vitis vinifera]8.5e-6939.04Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L  WK+  LS GGR+TL  S L  IP Y+LSLF++P  I  K+EK  R+F W    +G  +HL+RW + S   E GGLG G  + RN+ALL KW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEA-WDSD
          E S LW +VIASIYG     W A      S+R PW  I + +          V NG R+ FW  LW G+ TL  +F  L+RV+S    +V     +S 
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEA-WDSD

Query:  SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQ-EDEDRVMWKLESSGSFSVASLCKP-CKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEI
          SW +  RRNL D E +    L+S L+SV L     D   W L SSGSFSV S      K+++ +       LW S+ P +V  L+W++ +GKVNT + 
Subjt:  SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQ-EDEDRVMWKLESSGSFSVASLCKP-CKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEI

Query:  LQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
        LQ + P   + P  C+LC  +GES  H F  CP     W  LFNL  + W     + +++     G   S +   LW      +I  +W ERN RIF
Subjt:  LQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

TQD93576.1 hypothetical protein C1H46_020784 [Malus baccata]7.9e-7541Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L  WK+  LSRGGRLTL  SVLGS+P+YY+SLF++P G+  +LEK ++ F W    +G  NHLV+W I     E+GGLG+GNL  RN ALLAKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSC-FKVRNGTRVLFWHHLWLGDSTLKDRFLALF---RVVSFPFSSVCEAW
          E  +LW +VI S YG+    W A+    GS+RSPW +I     L   H C F+V NG RV FW   WL    LK++F  LF   R+ +   SS  + +
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSC-FKVRNGTRVLFWHHLWLGDSTLKDRFLALF---RVVSFPFSSVCEAW

Query:  DSDSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMT-DGQCSRLWKSRSPKRVNILSWILINGKVNT
         ++S SW  + RRNL + E EE   LL  +  V L Q   D   WKLE+S  F+  S      N  +M      S++WKS+ P +V IL W++  GK+NT
Subjt:  DSDSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMT-DGQCSRLWKSRSPKRVNILSWILINGKVNT

Query:  AEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
         + +Q++S  +C+ P  C LC A  ES  H F  C Y    W  LF     SW +      +++       +  KA +LW   V A+   +W ERN+RIF
Subjt:  AEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

TrEMBL top hitse value%identityAlignment
A0A540M4H0 zf-RVT domain-containing protein3.8e-7541Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L  WK+  LSRGGRLTL  SVLGS+P+YY+SLF++P G+  +LEK ++ F W    +G  NHLV+W I     E+GGLG+GNL  RN ALLAKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSC-FKVRNGTRVLFWHHLWLGDSTLKDRFLALF---RVVSFPFSSVCEAW
          E  +LW +VI S YG+    W A+    GS+RSPW +I     L   H C F+V NG RV FW   WL    LK++F  LF   R+ +   SS  + +
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSC-FKVRNGTRVLFWHHLWLGDSTLKDRFLALF---RVVSFPFSSVCEAW

Query:  DSDSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMT-DGQCSRLWKSRSPKRVNILSWILINGKVNT
         ++S SW  + RRNL + E EE   LL  +  V L Q   D   WKLE+S  F+  S      N  +M      S++WKS+ P +V IL W++  GK+NT
Subjt:  DSDSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMT-DGQCSRLWKSRSPKRVNILSWILINGKVNT

Query:  AEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
         + +Q++S  +C+ P  C LC A  ES  H F  C Y    W  LF     SW +      +++       +  KA +LW   V A+   +W ERN+RIF
Subjt:  AEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

A0A5H2XQW2 TatD related DNase6.3e-7036.34Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L RWKR  LS+GGRLTL  +VL SIP YY+SLF+MP G+  K+E+ +RNF W    +G   HLVRW   +   E+GGLGIG+L +RN AL AKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS
         +ET++LW ++I S YG+    W        S R+PW  I K ++   +   F V NG ++ FW   WL +  LKD F  L+ +      + C AW +++
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS

Query:  S----SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTA
             +W  + RRNL + E  E + LL  L +V L     DR  W++E  GSFS  S      + + +       +WK+++P ++    W+  NG++NT 
Subjt:  S----SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTA

Query:  EILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
        + +Q++ P MC+ PS CV C  + E+  H F  C Y+   W  + +     W +      +++  L       KA +L    + AI   +W ERN+RIF
Subjt:  EILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

A0A5N5H648 Ribonuclease H protein5.2e-7238.94Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L  WK+  LSRGGRLTL  SVLGS+P+YY+SLF++P G+  +LEK ++ F W    +G  NHLV+W I     E+GGLG+GNL  +N ALLAKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS
          E ++LW +VI + YG+    W A     GS+RSPW +I        +   FKV NG RV  W   WL    LK++F  LF +      ++    D   
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDS

Query:  S--SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTD-GQCSRLWKSRSPKRVNILSWILINGKVNTAE
        +  SW  + RRNL + E EE   LL  + +V L Q   D   WKL+ SG F+  S      N  ++      S++WKS+ P +V +L W++  G++NT +
Subjt:  S--SWRIETRRNLKDEEFEEFLTLLSCLNSVSL-QEDEDRVMWKLESSGSFSVASLCKPCKNASLMTD-GQCSRLWKSRSPKRVNILSWILINGKVNTAE

Query:  ILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF
         +Q++SP +CI P  C LC A  ES  H F  C Y    W  LF    +SW +      +++       +  KA  LW   V A+   +W ERN+RIF
Subjt:  ILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)4.8e-7037.91Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L +WKR  LS+GGRLTL  +VL SIP YY+SLF+MP G+  K+E+ +RNF W    +G   HLVRW   +   E+GGLGIG+L +RN AL AKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSV-CEAWDSD
         +ET++LW ++I S YGI    W        S R+PW  I K +    +   F V NG ++ FW  LWL +  LKD F  L  +      S+ C A +  
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSV-CEAWDSD

Query:  -SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDE-DRVMWKLESSGSFSVASLCKPCKNASLMTDGQC----SRLWKSRSPKRVNILSWILINGKVN
           +W  + RRNL + E  E + LL  L +V L     DR  W++E  GSFS    CK  ++  L T        S +WK+++P ++    W+  NG++N
Subjt:  -SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDE-DRVMWKLESSGSFSVASLCKPCKNASLMTDGQC----SRLWKSRSPKRVNILSWILINGKVN

Query:  TAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRI
        T + +Q++ P MC+ PS CVLC  + E+  H F  C Y+   W  +     + W +      +++  L       +A +L    V AI   +W ERNQRI
Subjt:  TAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRI

Query:  F
        F
Subjt:  F

M5XV38 zf-RVT domain-containing protein4.8e-7037.91Show/hide
Query:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF
        ++L +WKR  LS+GGRLTL  +VL SIP YY+SLF+MP G+  K+E+ +RNF W    +G   HLVRW   +   E+GGLGIG+L +RN AL AKW WRF
Subjt:  QKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRF

Query:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSV-CEAWDSD
         +ET++LW ++I S YGI    W        S R+PW  I K +    +   F V NG ++ FW  LWL +  LKD F  L  +      S+ C A +  
Subjt:  NVETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSV-CEAWDSD

Query:  -SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDE-DRVMWKLESSGSFSVASLCKPCKNASLMTDGQC----SRLWKSRSPKRVNILSWILINGKVN
           +W  + RRNL + E  E + LL  L +V L     DR  W++E  GSFS    CK  ++  L T        S +WK+++P ++    W+  NG++N
Subjt:  -SSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDE-DRVMWKLESSGSFSVASLCKPCKNASLMTDGQC----SRLWKSRSPKRVNILSWILINGKVN

Query:  TAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRI
        T + +Q++ P MC+ PS CVLC  + E+  H F  C Y+   W  +     + W +      +++  L       +A +L    V AI   +W ERNQRI
Subjt:  TAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRI

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657501.5e-2826.57Show/hide
Query:  KLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFN
        +++ W+   LS  GRLTL  +VL S+P++ +S   +P+ I  +L++  R F WG   +    HLV+W+      ++GGLG+      N AL++K GWR  
Subjt:  KLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFN

Query:  VETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKV-RNGTRVLFWHHLWLGDSTL-----KDRFLALFRVVSFPFSSVCEA
         E ++LW  V+   Y +G      +    GS  S W +I      V  H    +  +G ++ FW   W+    L      +R      VV+         
Subjt:  VETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKV-RNGTRVLFWHHLWLGDSTL-----KDRFLALFRVVSFPFSSVCEA

Query:  WD------SDSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCS---RLWKSRSPKRVNILSWI
        WD        +++ R+E R  + D                 +    DR+ WK    G FSV S  +      +      S    LWK R P+RV    W+
Subjt:  WD------SDSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCS---RLWKSRSPKRVNILSWI

Query:  LINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCW
        + N  V T E   ++  +     ++C +C    ES +H   DCP     W
Subjt:  LINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCW

P93295 Uncharacterized mitochondrial protein AtMg003102.1e-0625.81Show/hide
Query:  SIPLYYLSLFQMPKGICRKLEKCIRNFFWG--ENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWRQVIASIYGIGRFYW
        ++P+Y +S F++ K +C+KL   +  F+W   EN K  ++ +    +     +DGGLG  +L   N ALLAK  +R   +   L  +++ S Y       
Subjt:  SIPLYYLSLFQMPKGICRKLEKCIRNFFWG--ENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWRQVIASIYGIGRFYW

Query:  FAYGH----GIGSNRS-PWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDST
        F +       +G+  S  W +I     L+ +     + +G     W   W+ D T
Subjt:  FAYGH----GIGSNRS-PWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDST

Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.4e-1522.03Show/hide
Query:  KLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFN
        ++ +W    LS  GRL L +SV+ S+  +++S F++P    ++++    +F W      +    V W+      ++GGLGI +L + N            
Subjt:  KLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFN

Query:  VETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKD--RFLALFRVVSFPFSSVCEA-WDS
                         G F+  +    +GS    W  I K   L        + NG+   FW   W     L D         +     +SV EA  + 
Subjt:  VETSALWRQVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKD--RFLALFRVVSFPFSSVCEA-WDS

Query:  DSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDEDRVMWKLESSGSFSVASLCKPCKNAS---------LMTDGQCSRLWKSRSPKRVNILSWILIN
             R +T   ++D        +++ +    L   ED V WK           + KPC N            +       +W S +  + ++L+WI I 
Subjt:  DSSSWRIETRRNLKDEEFEEFLTLLSCLNSVSLQEDEDRVMWKLESSGSFSVASLCKPCKNAS---------LMTDGQCSRLWKSRSPKRVNILSWILIN

Query:  GKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAAD
         ++ T + +   +       S CVLC    E++ H FF CPY+A+
Subjt:  GKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAAD

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.1e-0924Show/hide
Query:  KVRNGTRVLFWHHLWLGDSTLKDRFLALF-RVVSFPFSSVCEAWDSDSSSWRIETR-RNLKDEEFEEFLT----LLSCLNSVSLQEDEDRVMWKLE---S
        +V +G    FWH  W+G   L +    L  R V  P  +V       +S W   +R RN    + +  L     LL C       + +D  +WK +    
Subjt:  KVRNGTRVLFWHHLWLGDSTLKDRFLALF-RVVSFPFSSVCEAWDSDSSSWRIETR-RNLKDEEFEEFLT----LLSCLNSVSLQEDEDRVMWKLE---S

Query:  SGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFS
        S  FS           S       +  +K+  PK    + W++   +++T + LQ    ++   P+ C+LC A  +S+ H FF+C ++   WR     F+
Subjt:  SGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFS

Query:  ISWALDMEVPNI-VTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRI
         S  L+     +     L  P       L+      + +  +W ERNQR+
Subjt:  ISWALDMEVPNI-VTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRI

AT4G29090.1 Ribonuclease H-like superfamily protein2.3e-1922.76Show/hide
Query:  SIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWRQVIASIYGIGRFYWF-
        ++P Y ++ F +PK +C+++   + +F+W    +    H   W+  S Y  +GG+G  ++   N ALL K  WR      +L  +V  S Y    F+   
Subjt:  SIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWRQVIASIYGIGRFYWF-

Query:  AYGHGIGSNRS-PWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSS------VCEAWDSDSSSWRIETRRNLKDEEFE
             +GS  S  W +I     ++ + +   V NG  ++ W H WL DS      L + RV    ++S      V +  D     WR +    L  E   
Subjt:  AYGHGIGSNRS-PWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSS------VCEAWDSDSSSWRIETRRNLKDEEFE

Query:  EFLTLLSCLNSVSLQEDEDRVMWKLESSGSFSVAS-----------LCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMC
        + +  L       L    D   W   SSG ++V S              P + +    +    ++WKS++  ++    W  ++  +  A  L  +  +  
Subjt:  EFLTLLSCLNSVSLQEDEDRVMWKLESSGSFSVAS-----------LCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMC

Query:  IQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNG---VKAIISELWFERNQRIF
         + S C+ C +  E+  H  F C +A   W     + SI   L  E  + +   L+  F     +  W      V  ++  LW  RN+ +F
Subjt:  IQPSICVLCMADGESQMHTFFDCPYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNG---VKAIISELWFERNQRIF

AT5G16486.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.8e-0827.14Show/hide
Query:  IGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALF-RVVSFPFSSVCEAWDSDSSSWRIETR-RNLKDEEFEEFLTLLSCLN
        I S    W +I K   +  +    KV +G    FW   W     L      L  RV   P ++       D   W   +R RN   +  +  L L S +N
Subjt:  IGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALF-RVVSFPFSSVCEAWDSDSSSWRIETR-RNLKDEEFEEFLTLLSCLN

Query:  SVSLQEDEDRVMWKL---ESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMH
         + +  ++D  MWK+   E+S  FS A+            D   +  +K R PK    +SW+ I  ++ T + L     ++   PS+C+LC A  E++ H
Subjt:  SVSLQEDEDRVMWKL---ESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMH

Query:  TFFDCPYAAD
         FFDC +A +
Subjt:  TFFDCPYAAD

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.5e-0725.81Show/hide
Query:  SIPLYYLSLFQMPKGICRKLEKCIRNFFWG--ENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWRQVIASIYGIGRFYW
        ++P+Y +S F++ K +C+KL   +  F+W   EN K  ++ +    +     +DGGLG  +L   N ALLAK  +R   +   L  +++ S Y       
Subjt:  SIPLYYLSLFQMPKGICRKLEKCIRNFFWG--ENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWRQVIASIYGIGRFYW

Query:  FAYGH----GIGSNRS-PWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDST
        F +       +G+  S  W +I     L+ +     + +G     W   W+ D T
Subjt:  FAYGH----GIGSNRS-PWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAACTAGCAAGATGGAAGCGATATCAGCTCTCAAGAGGCGGAAGATTAACTCTCTGCACGTCAGTTCTTGGTAGCATTCCCCTGTATTATCTTTCTCTATTTCA
AATGCCAAAAGGGATATGCAGGAAGCTCGAGAAGTGTATAAGAAACTTTTTCTGGGGAGAAAATCTGAAAGGATCTGTGAACCATCTTGTTAGATGGAATATTGCCTCTT
TATATCATGAAGATGGTGGTTTGGGCATTGGCAACCTCACTCAAAGAAATAATGCCTTGTTGGCTAAATGGGGTTGGAGATTTAATGTGGAAACTTCTGCATTATGGAGG
CAAGTAATAGCTAGTATATATGGTATTGGCAGATTTTATTGGTTTGCTTACGGACATGGGATTGGAAGTAATCGAAGTCCTTGGTTTAACATTCAAAAACAATGGCTGCT
AGTTGAAAAGCATTCTTGCTTTAAAGTGCGAAATGGTACACGGGTTCTATTCTGGCATCATTTATGGTTGGGAGATTCAACTCTTAAAGATCGGTTTCTTGCCCTGTTCC
GGGTTGTGTCGTTCCCCTTTTCTTCAGTTTGTGAGGCTTGGGATTCGGATTCTTCTTCTTGGAGAATAGAAACAAGAAGAAATCTTAAAGATGAAGAATTTGAAGAGTTT
TTAACACTTTTATCATGTCTGAATTCAGTCTCCTTGCAAGAGGATGAAGATCGTGTGATGTGGAAGCTGGAATCTTCAGGATCTTTTTCTGTTGCTTCGTTATGCAAGCC
TTGTAAAAATGCCTCCTTGATGACAGATGGACAATGCTCTAGACTGTGGAAGTCGAGAAGTCCAAAAAGGGTTAATATTCTTTCTTGGATTCTTATTAATGGAAAGGTTA
ACACAGCTGAAATTCTCCAAAAGAAATCCCCAAATATGTGCATACAACCTTCCATTTGTGTGCTGTGTATGGCTGATGGTGAATCTCAAATGCACACTTTCTTTGATTGT
CCGTATGCAGCAGATTGTTGGAGATCATTGTTCAATTTATTCTCAATTTCTTGGGCGTTGGATATGGAGGTCCCGAATATTGTTACTCAACTATTGTTCGGGCCATTCTT
ATCTCCTAAAGCGAGTCTTCTTTGGGTAAACGGGGTTAAAGCCATCATTTCAGAACTTTGGTTTGAAAGGAACCAAAGGATTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGAAACTAGCAAGATGGAAGCGATATCAGCTCTCAAGAGGCGGAAGATTAACTCTCTGCACGTCAGTTCTTGGTAGCATTCCCCTGTATTATCTTTCTCTATTTCA
AATGCCAAAAGGGATATGCAGGAAGCTCGAGAAGTGTATAAGAAACTTTTTCTGGGGAGAAAATCTGAAAGGATCTGTGAACCATCTTGTTAGATGGAATATTGCCTCTT
TATATCATGAAGATGGTGGTTTGGGCATTGGCAACCTCACTCAAAGAAATAATGCCTTGTTGGCTAAATGGGGTTGGAGATTTAATGTGGAAACTTCTGCATTATGGAGG
CAAGTAATAGCTAGTATATATGGTATTGGCAGATTTTATTGGTTTGCTTACGGACATGGGATTGGAAGTAATCGAAGTCCTTGGTTTAACATTCAAAAACAATGGCTGCT
AGTTGAAAAGCATTCTTGCTTTAAAGTGCGAAATGGTACACGGGTTCTATTCTGGCATCATTTATGGTTGGGAGATTCAACTCTTAAAGATCGGTTTCTTGCCCTGTTCC
GGGTTGTGTCGTTCCCCTTTTCTTCAGTTTGTGAGGCTTGGGATTCGGATTCTTCTTCTTGGAGAATAGAAACAAGAAGAAATCTTAAAGATGAAGAATTTGAAGAGTTT
TTAACACTTTTATCATGTCTGAATTCAGTCTCCTTGCAAGAGGATGAAGATCGTGTGATGTGGAAGCTGGAATCTTCAGGATCTTTTTCTGTTGCTTCGTTATGCAAGCC
TTGTAAAAATGCCTCCTTGATGACAGATGGACAATGCTCTAGACTGTGGAAGTCGAGAAGTCCAAAAAGGGTTAATATTCTTTCTTGGATTCTTATTAATGGAAAGGTTA
ACACAGCTGAAATTCTCCAAAAGAAATCCCCAAATATGTGCATACAACCTTCCATTTGTGTGCTGTGTATGGCTGATGGTGAATCTCAAATGCACACTTTCTTTGATTGT
CCGTATGCAGCAGATTGTTGGAGATCATTGTTCAATTTATTCTCAATTTCTTGGGCGTTGGATATGGAGGTCCCGAATATTGTTACTCAACTATTGTTCGGGCCATTCTT
ATCTCCTAAAGCGAGTCTTCTTTGGGTAAACGGGGTTAAAGCCATCATTTCAGAACTTTGGTTTGAAAGGAACCAAAGGATTTTTTAG
Protein sequenceShow/hide protein sequence
MQKLARWKRYQLSRGGRLTLCTSVLGSIPLYYLSLFQMPKGICRKLEKCIRNFFWGENLKGSVNHLVRWNIASLYHEDGGLGIGNLTQRNNALLAKWGWRFNVETSALWR
QVIASIYGIGRFYWFAYGHGIGSNRSPWFNIQKQWLLVEKHSCFKVRNGTRVLFWHHLWLGDSTLKDRFLALFRVVSFPFSSVCEAWDSDSSSWRIETRRNLKDEEFEEF
LTLLSCLNSVSLQEDEDRVMWKLESSGSFSVASLCKPCKNASLMTDGQCSRLWKSRSPKRVNILSWILINGKVNTAEILQKKSPNMCIQPSICVLCMADGESQMHTFFDC
PYAADCWRSLFNLFSISWALDMEVPNIVTQLLFGPFLSPKASLLWVNGVKAIISELWFERNQRIF