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MS028651 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028651
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold378:375507..376139
RNA-Seq ExpressionMS028651
SyntenyMS028651
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012857846.1 PREDICTED: uncharacterized protein LOC105977118 [Erythranthe guttata]8.9e-1737.59Show/hide
Query:  IEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWSKNPD
        I AFRN ++ C+LSD+GF+GS +TW NN    D +R RLD    N  + SLFP A V HL +S SDH  I   +  S   +  R  + F +E  W +  D
Subjt:  IEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWSKNPD

Query:  CEKILSDN-GMNAAFSFSESI----RASSLALRNWGKSNIR
        CE I++     N      E +        +AL NW K+ +R
Subjt:  CEKILSDN-GMNAAFSFSESI----RASSLALRNWGKSNIR

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.0e-2842.53Show/hide
Query:  LLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNIT
        L+G      LW++EASYTS+YD++ IEAFRN+MD C+L+DMGF+G  +TWCNN   GDQL KRLD F+CN++F  +FP A      WS + H        
Subjt:  LLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNIT

Query:  ASITGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL
                                              +SFS+SI+ASS ALR+WG+SN+ DLFKQI +Q AA+
Subjt:  ASITGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL

XP_022158772.1 uncharacterized protein LOC111025237 [Momordica charantia]4.7e-3456.56Show/hide
Query:  LWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRR
        LW+HEASY S+YD++ I AFRNVMD C+L+DMGF G ++TWCNN   GDQL K LD F+CN+SF SLFP A + HL WSKSDH  I L++ A  + + +R
Subjt:  LWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRR

Query:  SLKSFCYEECWSKNPDCEKILS
        S K   +EE W +NP+CE+++S
Subjt:  SLKSFCYEECWSKNPDCEKILS

XP_023879274.1 uncharacterized protein LOC111991717 [Quercus suber]9.5e-1931.58Show/hide
Query:  AEFIIMMILRGLLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSK
        A+F +  ++ G   EI+ +     E    +  ++  +EAFRN +D+C L D+GF G ++TWCN      +   RLD  V N  + +LF  A+V H   S 
Subjt:  AEFIIMMILRGLLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSK

Query:  SDHCTIALNITASITGRDRRSLKSFCYEECWSKNPDCEKILS-----DNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL
        SDHC +AL +   +  R RR    F +E  W+++  C  ++      D+ +   +S  + IR     L+ WGK+   +L KQIN +  +L
Subjt:  SDHCTIALNITASITGRDRRSLKSFCYEECWSKNPDCEKILS-----DNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL

XP_030923147.1 uncharacterized protein LOC115950034 [Quercus lobata]4.0e-1730.57Show/hide
Query:  DSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWS
        D+  I  FR+V+  C L D+GF G ++TWCN      +   RLD  V NE+++ LFP A V H+  S SDHC +AL++  +   + R+  K F +E  W 
Subjt:  DSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWS

Query:  KNPDCEKIL----SDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL
        +  +C++++    + N   AA S  + ++     L  W ++   ++ K++  +   L
Subjt:  KNPDCEKIL----SDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL

TrEMBL top hitse value%identityAlignment
A0A2N9F6L9 Reverse transcriptase domain-containing protein3.0e-1836.36Show/hide
Query:  IEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWSKNPD
        ++AFRNV+D C L D+GF G  +TWCNN    +    RLD  V N  +   FP ARV HL   KSDH  + LN     + R RR  K F +EE W  +  
Subjt:  IEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWSKNPD

Query:  CEKIL-----SDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL
        CE+ +     SD    A F  S  +R     L +W + +  ++ K+I +    L
Subjt:  CEKIL-----SDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL

A0A6J1DX30 uncharacterized protein LOC1110248744.9e-2942.53Show/hide
Query:  LLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNIT
        L+G      LW++EASYTS+YD++ IEAFRN+MD C+L+DMGF+G  +TWCNN   GDQL KRLD F+CN++F  +FP A      WS + H        
Subjt:  LLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNIT

Query:  ASITGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL
                                              +SFS+SI+ASS ALR+WG+SN+ DLFKQI +Q AA+
Subjt:  ASITGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL

A0A6J1DY29 uncharacterized protein LOC1110252372.3e-3456.56Show/hide
Query:  LWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRR
        LW+HEASY S+YD++ I AFRNVMD C+L+DMGF G ++TWCNN   GDQL K LD F+CN+SF SLFP A + HL WSKSDH  I L++ A  + + +R
Subjt:  LWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRR

Query:  SLKSFCYEECWSKNPDCEKILS
        S K   +EE W +NP+CE+++S
Subjt:  SLKSFCYEECWSKNPDCEKILS

A0A7N2LIH6 Uncharacterized protein2.5e-1731.21Show/hide
Query:  DSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWS
        D+  ++AFR V+  C L D+GF G ++TWCN      +   RLD  V NE++  +FP A+V H+  S SDHC +AL +        RR  K F +EE W+
Subjt:  DSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWS

Query:  KNPDCEKIL----SDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL
        +  +C++I+         ++A    E +      L+ W +++  +++K I  +   L
Subjt:  KNPDCEKIL----SDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAAL

A0A803LZT1 Uncharacterized protein1.0e-1832.74Show/hide
Query:  LLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNIT
        LLG    L L S E      + +   + FR  +DHC L DMG+ G  +TW NN   G+ +++RLD F+ N  +   FP + V+HL   KSDH  I L + 
Subjt:  LLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVSHLQWSKSDHCTIALNIT

Query:  ASI-TGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQI
         ++ T + R+  K + +EE W ++ +C  I+S+            I  +S  L +W K   RD  K++
Subjt:  ASI-TGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATTCAGTACCTCATAAACGAAATGAAACTTGGGAGTTTCTTCGCCGAATTTATAATCATGATGATTCTCCGTGGCTTGTTGGGGGAGATTTCAACGCTCTTTCT
TTGGAGCCATGAGGCTTCTTACACTTCTACTTATGACTCAACTCACATAGAAGCTTTTAGAAATGTAATGGATCATTGTGCTCTTTCGGATATGGGTTTTCAAGGAAGTC
AGTATACTTGGTGTAATAATCATTCGGTTGGGGACCAATTACGGAAGCGTCTGGACCATTTTGTTTGTAATGAGTCCTTTTATTCTCTTTTTCCTGCTGCTCGTGTCTCC
CATCTCCAATGGTCCAAATCTGATCACTGTACTATTGCCCTGAATATTACAGCCTCAATCACAGGAAGAGATAGAAGGTCTTTAAAATCGTTTTGCTATGAGGAATGTTG
GTCGAAAAATCCAGATTGCGAGAAAATCTTATCGGATAATGGAATGAATGCTGCATTTTCTTTTTCCGAGAGCATACGTGCTTCTTCTTTGGCCCTAAGGAATTGGGGTA
AATCCAACATTCGCGATTTGTTTAAGCAAATTAATTCGCAGAATGCAGCCCTTACTGTGCCTATAATCAACCCCTTCCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCATTCAGTACCTCATAAACGAAATGAAACTTGGGAGTTTCTTCGCCGAATTTATAATCATGATGATTCTCCGTGGCTTGTTGGGGGAGATTTCAACGCTCTTTCT
TTGGAGCCATGAGGCTTCTTACACTTCTACTTATGACTCAACTCACATAGAAGCTTTTAGAAATGTAATGGATCATTGTGCTCTTTCGGATATGGGTTTTCAAGGAAGTC
AGTATACTTGGTGTAATAATCATTCGGTTGGGGACCAATTACGGAAGCGTCTGGACCATTTTGTTTGTAATGAGTCCTTTTATTCTCTTTTTCCTGCTGCTCGTGTCTCC
CATCTCCAATGGTCCAAATCTGATCACTGTACTATTGCCCTGAATATTACAGCCTCAATCACAGGAAGAGATAGAAGGTCTTTAAAATCGTTTTGCTATGAGGAATGTTG
GTCGAAAAATCCAGATTGCGAGAAAATCTTATCGGATAATGGAATGAATGCTGCATTTTCTTTTTCCGAGAGCATACGTGCTTCTTCTTTGGCCCTAAGGAATTGGGGTA
AATCCAACATTCGCGATTTGTTTAAGCAAATTAATTCGCAGAATGCAGCCCTTACTGTGCCTATAATCAACCCCTTCCTTTAG
Protein sequenceShow/hide protein sequence
MVIQYLINEMKLGSFFAEFIIMMILRGLLGEISTLFLWSHEASYTSTYDSTHIEAFRNVMDHCALSDMGFQGSQYTWCNNHSVGDQLRKRLDHFVCNESFYSLFPAARVS
HLQWSKSDHCTIALNITASITGRDRRSLKSFCYEECWSKNPDCEKILSDNGMNAAFSFSESIRASSLALRNWGKSNIRDLFKQINSQNAALTVPIINPFL