CuGenDBv2

Gene ID	MS028793
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	initiator tRNA phosphoribosyl transferase family protein
Genome location	scaffold570:610097..611830
RNA-Seq Expression	MS028793
Synteny	MS028793
Gene Ontology terms	GO:0019988 - charged-tRNA amino acid modification (biological process) GO:0043399 - tRNA A64-2'-O-ribosylphosphate transferase activity (molecular function)
InterPro domains	IPR007306 - tRNA A64-2'-O-ribosylphosphate transferase IPR029021 - Protein-tyrosine phosphatase-like IPR033421 - Rit1, DUSP-like domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599478.1 hypothetical protein SDJN03_09256, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-60

74.44

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN-----------------SVTASDVVDGIV
        MSSG D+ +QKVAEIVEKDRVYRA RGNDAPQISVKSQKVGGSSTQVP IEQ+LSLDISD EL  +SS+GN                  VTA D VD I+
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN-----------------SVTASDVVDGIV

Query:  NCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        NCDQES+SVCLP A+AYLHLPM MSKLDRFSLSR+LP+AVDFAK NLS+GKRLL+CCSNGEDIS+CVCLA+LT LFDDKG
Subjt:  NCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

KAG7030455.1 SPAC3F10.06c [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-60

74.03

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYRA RGNDAPQISVKSQKVGGSSTQVP IEQ+LSLDISD EL  +SS+GN                  +VTA D VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQES+SVCLP A+AYLHLPM MSKLDRFSLSR+LP+AVDFAK NLS+GKRLL+CCSNGEDIS+CVCLA+LT LFDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

XP_022158491.1 uncharacterized protein C3F10.06c isoform X1 [Momordica charantia]

1.8e-60

75.14

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYR  RGND PQISVKSQK+GGSSTQVPPIEQ+L+LDISDA++ T+SSNGN                  +VTASD VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQESVSVCLP AEAYLHLPMVMSKLDRFSLSRNLPSAV FAK NL  GKRLL+CCSNGEDISICVCLA+LT +FDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

XP_022158493.1 uncharacterized protein C3F10.06c isoform X2 [Momordica charantia]

2.4e-60

75.56

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGNS-----------------VTASDVVDGIV
        MSSG D+ +QKVAEIVEKDRVYR  RGND PQISVKSQK+GGSSTQVPPIEQ+L+LDISDA++ T+SSNGN                  VTASD VD I+
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGNS-----------------VTASDVVDGIV

Query:  NCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        NCDQESVSVCLP AEAYLHLPMVMSKLDRFSLSRNLPSAV FAK NL  GKRLL+CCSNGEDISICVCLA+LT +FDDKG
Subjt:  NCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

XP_022158494.1 uncharacterized protein C3F10.06c isoform X3 [Momordica charantia]

1.8e-60

75.14

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYR  RGND PQISVKSQK+GGSSTQVPPIEQ+L+LDISDA++ T+SSNGN                  +VTASD VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQESVSVCLP AEAYLHLPMVMSKLDRFSLSRNLPSAV FAK NL  GKRLL+CCSNGEDISICVCLA+LT +FDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DW88 uncharacterized protein C3F10.06c isoform X2

1.2e-60

75.56

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGNS-----------------VTASDVVDGIV
        MSSG D+ +QKVAEIVEKDRVYR  RGND PQISVKSQK+GGSSTQVPPIEQ+L+LDISDA++ T+SSNGN                  VTASD VD I+
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGNS-----------------VTASDVVDGIV

Query:  NCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        NCDQESVSVCLP AEAYLHLPMVMSKLDRFSLSRNLPSAV FAK NL  GKRLL+CCSNGEDISICVCLA+LT +FDDKG
Subjt:  NCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

A0A6J1DXD4 uncharacterized protein C3F10.06c isoform X1

8.9e-61

75.14

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYR  RGND PQISVKSQK+GGSSTQVPPIEQ+L+LDISDA++ T+SSNGN                  +VTASD VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQESVSVCLP AEAYLHLPMVMSKLDRFSLSRNLPSAV FAK NL  GKRLL+CCSNGEDISICVCLA+LT +FDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

A0A6J1DZK5 uncharacterized protein C3F10.06c isoform X3

8.9e-61

75.14

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYR  RGND PQISVKSQK+GGSSTQVPPIEQ+L+LDISDA++ T+SSNGN                  +VTASD VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQESVSVCLP AEAYLHLPMVMSKLDRFSLSRNLPSAV FAK NL  GKRLL+CCSNGEDISICVCLA+LT +FDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

A0A6J1G508 uncharacterized protein C3F10.06c isoform X1

7.5e-60

73.48

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYRA RGNDAPQISVKSQKVGGSSTQVP IEQ+LSLDISD EL  +SS+GN                  +VTA D VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQES+SVCL  A+AYLHLPM MSKLDRFSLSR+LP+AVDFAK NLS+GKRLL+CCSNGEDIS+CVCLA+LT LFDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

A0A6J1G537 uncharacterized protein C3F10.06c isoform X2

7.5e-60

73.48

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Query:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI
        MSSG D+ +QKVAEIVEKDRVYRA RGNDAPQISVKSQKVGGSSTQVP IEQ+LSLDISD EL  +SS+GN                  +VTA D VD I
Subjt:  MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGN------------------SVTASDVVDGI

Query:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG
        +NCDQES+SVCL  A+AYLHLPM MSKLDRFSLSR+LP+AVDFAK NLS+GKRLL+CCSNGEDIS+CVCLA+LT LFDDKG
Subjt:  VNCDQESVSVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLT-LFDDKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G40570.1 initiator tRNA phosphoribosyl transferase family protein

2.0e-36

51.45

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Query:  SGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTE------SSNGNSVTASDV------VDGIVNCDQESV
        SG DL +QKVAEIVE DRVYRA RG +APQ+ VK  K  G        ++IL L     ++  E      SS   +V AS V      +D I+NCDQ  +
Subjt:  SGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTE------SSNGNSVTASDV------VDGIVNCDQESV

Query:  SVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAML-TLFDDKG
        SV +   E +LHLPM  SK DRFS+SRNLP AV+FAKL +S GK++L+CC +GEDISICVCLA+L +LF+++G
Subjt:  SVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAML-TLFDDKG

AT2G40570.2 initiator tRNA phosphoribosyl transferase family protein

4.0e-29

47.5

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Query:  SGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTE------SSNGNSVTASDV------VDGIVNCDQESV
        SG DL +QKVAEIVE DRVYRA RG +APQ+ VK  K  G        ++IL L     ++  E      SS   +V AS V      +D I+NCDQ  +
Subjt:  SGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTE------SSNGNSVTASDV------VDGIVNCDQESV

Query:  SVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICV
        SV +   E +LHLPM  SK DRFS+SRNLP AV+FAKL +S GK++L+CC +G+   +C+
Subjt:  SVCLPNAEAYLHLPMVMSKLDRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICV

Sequences

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CDS sequence

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ATGAGCTCCGGACTTGACCTTCGTGATCAGAAGGTAGCTGAAATAGTCGAAAAGGACAGAGTATATCGAGCTCCAAGGGGAAATGATGCGCCTCAGATCAGTGTTAAATC
TCAGAAGGTGGGAGGATCCTCAACTCAAGTCCCACCTATTGAGCAAATATTATCTTTGGATATCTCTGATGCGGAGCTACATACAGAATCCTCTAATGGAAATTCAGTGA
CTGCGTCCGACGTCGTCGATGGCATAGTAAATTGTGATCAAGAGTCTGTATCTGTTTGCCTTCCAAATGCTGAAGCATATCTTCATCTACCTATGGTGATGTCGAAACTG
GATCGCTTTTCCCTGTCAAGAAATCTTCCTTCTGCAGTAGATTTTGCAAAGTTGAATCTTAGCCAAGGGAAAAGACTTCTAATTTGCTGTAGCAATGGGGAAGATATTAG
CATATGTGTTTGCTTGGCGATGTTGACTTTATTCGATGACAAAGGTGGAGACCCGAAGCTTCAACCGTTGAATCAGTGA

mRNA sequence

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Protein sequence

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MSSGLDLRDQKVAEIVEKDRVYRAPRGNDAPQISVKSQKVGGSSTQVPPIEQILSLDISDAELHTESSNGNSVTASDVVDGIVNCDQESVSVCLPNAEAYLHLPMVMSKL
DRFSLSRNLPSAVDFAKLNLSQGKRLLICCSNGEDISICVCLAMLTLFDDKGGDPKLQPLNQ

MS028793 (gene) of Bitter gourd (TR) v1 genome