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MS028813 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028813
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent RNA helicase DBP3-like
Genome locationscaffold207:984310..984579
RNA-Seq ExpressionMS028813
SyntenyMS028813
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580907.1 hypothetical protein SDJN03_20909, partial [Cucurbita argyrosperma subsp. sororia]7.4e-0559.46Show/hide
Query:  HHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKEKEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD
        H G +++G   GG+VE+MKEKIH YKEKK+E+RKQRKEK++++KKE++ KEEE   DGGG S+    +SGGGSD
Subjt:  HHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKEKEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD

XP_016899655.1 PREDICTED: ATP-dependent RNA helicase DBP3-like [Cucumis melo]1.0e-0657.61Show/hide
Query:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKE-KEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD
        M+GI  KI+ T+  H+  H G+  G   GG+VEKMKEKIH YKEK KE++KQRKE KEKKEK++++  + + E+DGG SS  DSD SGGGSD
Subjt:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKE-KEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD

XP_031737596.1 dehydrin HIRD11-like [Cucumis sativus]2.1e-0758.16Show/hide
Query:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEK---KKERRKQRKEKEKKEKKEKRVK----EEEEEDDGGGSSASDSDSSGGGSD
        M+GI  KIQ T+  H+  H G+       G+VEKMKEKIH YKEK   KK++RK+RKEK++KEKKEK+ K    E EEE+DGG SS  DSD SGGGSD
Subjt:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEK---KKERRKQRKEKEKKEKKEKRVK----EEEEEDDGGGSSASDSDSSGGGSD

TrEMBL top hitse value%identityAlignment
A0A0A0LCI3 Uncharacterized protein1.0e-0758.16Show/hide
Query:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEK---KKERRKQRKEKEKKEKKEKRVK----EEEEEDDGGGSSASDSDSSGGGSD
        M+GI  KIQ T+  H+  H G+       G+VEKMKEKIH YKEK   KK++RK+RKEK++KEKKEK+ K    E EEE+DGG SS  DSD SGGGSD
Subjt:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEK---KKERRKQRKEKEKKEKKEKRVK----EEEEEDDGGGSSASDSDSSGGGSD

A0A1S4DVB9 ATP-dependent RNA helicase DBP3-like5.0e-0757.61Show/hide
Query:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKE-KEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD
        M+GI  KI+ T+  H+  H G+  G   GG+VEKMKEKIH YKEK KE++KQRKE KEKKEK++++  + + E+DGG SS  DSD SGGGSD
Subjt:  MSGIKNKIQGTL--HRGHHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKE-KEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGAATAAAGAACAAGATTCAAGGAACTCTGCACCGCGGTCATCACGGTGGCGACAGAGAAGGCGGTGGCAGCGGCGGCCTCGTGGAGAAGATGAAGGAGAAGAT
CCATGATTATAAGGAGAAGAAGAAAGAGAGGCGGAAGCAGAGAAAGGAGAAGGAAAAGAAAGAAAAGAAGGAAAAGAGAGTAAAAGAGGAAGAGGAGGAGGACGACGGAG
GCGGTAGCAGCGCCAGCGACAGCGATAGCAGTGGCGGTGGTAGCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGAATAAAGAACAAGATTCAAGGAACTCTGCACCGCGGTCATCACGGTGGCGACAGAGAAGGCGGTGGCAGCGGCGGCCTCGTGGAGAAGATGAAGGAGAAGAT
CCATGATTATAAGGAGAAGAAGAAAGAGAGGCGGAAGCAGAGAAAGGAGAAGGAAAAGAAAGAAAAGAAGGAAAAGAGAGTAAAAGAGGAAGAGGAGGAGGACGACGGAG
GCGGTAGCAGCGCCAGCGACAGCGATAGCAGTGGCGGTGGTAGCGACTAG
Protein sequenceShow/hide protein sequence
MSGIKNKIQGTLHRGHHGGDREGGGSGGLVEKMKEKIHDYKEKKKERRKQRKEKEKKEKKEKRVKEEEEEDDGGGSSASDSDSSGGGSD