; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS028823 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS028823
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold368:294085..306593
RNA-Seq ExpressionMS028823
SyntenyMS028823
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026044.1 hypothetical protein E6C27_scaffold581G00300 [Cucumis melo var. makuwa]6.2e-1850Show/hide
Query:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVL
        G+ESRDHLFF CP+   VW+ ++    SSH+  +W  ELSWICH   G  VRR +W + W +T+  +W ERN R+HGGQ R   VL
Subjt:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVL

KAA0042317.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]8.1e-1853.09Show/hide
Query:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGR
        G+ESRDHLFF CP+ R VW+ ++    SSH+  YW  ELSWICH   G SVRR +WR+   +T   +W+E N R+HGGQ R
Subjt:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGR

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]8.1e-1842.86Show/hide
Query:  RWCLLLVFFC----AGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSV
        RW   +   C     G+ESRDHLFF CP+   VW+ +     SSH+  +W  ELSWICH   G  VRR +WR+ W +T+  +W ERN R+HGG+ R   +
Subjt:  RWCLLLVFFC----AGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSV

Query:  LLRVM
        L  ++
Subjt:  LLRVM

XP_022158199.1 uncharacterized protein LOC111024737 [Momordica charantia]2.4e-2574.7Show/hide
Query:  FDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVA
        F   + +A W+ +     SSH+ SYWSTEL+WICHVSAGSS RRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRV+ A
Subjt:  FDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVA

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]1.9e-6787.92Show/hide
Query:  FCAGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVM---VATL
        FCAGLESRDHLF DCPYSRAVWAGMISWAGSSH+ SYWSTEL+WICHV+ GSS RRHVWRLAWT TVSLLWRE NLRIH GQGR SSVLLRV+   VAT 
Subjt:  FCAGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVM---VATL

Query:  DGFVKERMDELVDMWKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAK
        DGFVKERM+ELVD+WKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAK
Subjt:  DGFVKERMDELVDMWKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAK

TrEMBL top hitse value%identityAlignment
A0A5A7SK23 Uncharacterized protein3.0e-1850Show/hide
Query:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVL
        G+ESRDHLFF CP+   VW+ ++    SSH+  +W  ELSWICH   G  VRR +W + W +T+  +W ERN R+HGGQ R   VL
Subjt:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVL

A0A5A7TKU4 Non-LTR retroelement reverse transcriptase-like protein3.9e-1853.09Show/hide
Query:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGR
        G+ESRDHLFF CP+ R VW+ ++    SSH+  YW  ELSWICH   G SVRR +WR+   +T   +W+E N R+HGGQ R
Subjt:  GLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGR

A0A5A7TZS0 Reverse transcriptase domain-containing protein3.9e-1842.86Show/hide
Query:  RWCLLLVFFC----AGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSV
        RW   +   C     G+ESRDHLFF CP+   VW+ +     SSH+  +W  ELSWICH   G  VRR +WR+ W +T+  +W ERN R+HGG+ R   +
Subjt:  RWCLLLVFFC----AGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSV

Query:  LLRVM
        L  ++
Subjt:  LLRVM

A0A6J1DYP6 uncharacterized protein LOC1110247371.1e-2574.7Show/hide
Query:  FDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVA
        F   + +A W+ +     SSH+ SYWSTEL+WICHVSAGSS RRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRV+ A
Subjt:  FDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVA

A0A6J1E271 uncharacterized protein LOC1110253249.2e-6887.92Show/hide
Query:  FCAGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVM---VATL
        FCAGLESRDHLF DCPYSRAVWAGMISWAGSSH+ SYWSTEL+WICHV+ GSS RRHVWRLAWT TVSLLWRE NLRIH GQGR SSVLLRV+   VAT 
Subjt:  FCAGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVM---VATL

Query:  DGFVKERMDELVDMWKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAK
        DGFVKERM+ELVD+WKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAK
Subjt:  DGFVKERMDELVDMWKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein5.8e-0632.04Show/hide
Query:  ESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVATLDGFVKERM
        ESR HLFF+CP+  AVW      A            L W+ + S   +    + RLA+ + V  +WRERNL +H G  R+   +L+ +  T    ++ R+
Subjt:  ESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVATLDGFVKERM

Query:  DEL
        D +
Subjt:  DEL

AT1G45063.1 copper ion binding;electron carriers4.4e-0632.56Show/hide
Query:  LVFFCAGL-ESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQ
        L   C  L E+R H+FFDCP+S  VW+   S A  +    +      W+ H      V   + +LA+ ++V  +WRERN+R++  +
Subjt:  LVFFCAGL-ESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQ

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.1e-0429.89Show/hide
Query:  ESRDHLFFDCPYSRAVWAGMISWAGSSH--QGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLL
        E+R HLFFDC ++R VW   I +    H      +   + W+ +     +V   + RL+  ++V  +W+ERN R+H    R ++ L+
Subjt:  ESRDHLFFDCPYSRAVWAGMISWAGSSH--QGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLL

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.4e-0630.1Show/hide
Query:  ESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVATLDGFVKERM
        +SR HLFF+C +S  VW    +    +         L+W+   S   ++   + RLA+ S V  +WRERN R+H G  R +  +L+     +   ++ R+
Subjt:  ESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVATLDGFVKERM

Query:  DEL
        D L
Subjt:  DEL

AT4G05095.1 BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT4G04650.1)1.3e-0529.82Show/hide
Query:  RWCLLL---VFFCAG-LESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSV
        RW L +      C+G  E R+HLFF C  S AVW G   +  S      +   L+W+   S   ++   + +L + +++  LW+ERN R+H    R S+ 
Subjt:  RWCLLL---VFFCAG-LESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSV

Query:  LLR----VMVATLD
        +++    ++ A LD
Subjt:  LLR----VMVATLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTGGTGCCTGCTACTTGTGTTTTTTTGTGCTGGTTTGGAGTCTAGGGATCATCTGTTTTTTGATTGCCCTTATAGTAGAGCGGTTTGGGCTGGTATGATTTCGTG
GGCAGGTTCGTCTCATCAGGGTTCATATTGGTCTACAGAGCTTTCTTGGATTTGTCATGTTAGTGCTGGGTCGTCTGTTCGGCGGCATGTATGGCGGTTAGCTTGGACTT
CGACTGTCTCTCTCCTTTGGAGGGAGCGGAACCTTCGTATTCATGGTGGTCAGGGTCGCTTGTCATCTGTGCTCCTTAGGGTCATGGTGGCGACGCTCGATGGTTTCGTG
AAGGAGAGGATGGATGAACTTGTTGATATGTGGAAGGGTTTAGATCTTTCAGATGAGAAGAATGAAGTTGTACAGGTTGGGTATGAAAGCAATTTGTTATCTGCTGATAG
TGTGGAGTTGTGTGCTGTGGCAAAGTGTAGTAGTGCACCTCTTTCTCTCTCAACATCCGACCAATCGTTCCAATATGGGGAGTGGCTGTGTGCCTCCGTTCTGAAAAGGG
GTTCGAATACGACTTCTAAGACTCATCTTGTGCGATCGACCAATCTTATGGCTTTGGGTGAGAACGACGACAAAGAGGACGAACATACCGGCGGTGGGGGTTCTGGGCGT
GAGCGGGCGATACCGCTTAACTTTGCTTTTGGGACAATGCCGGTGACCCACACGAAGTCAAAATGGAAGCGTCCTGCCAAGGTCAAAGCTGCGGTCCATCTAGAGAATAA
AATTTTGGGGAATAGGCCTCTTAGTTATGAAGGATCTGTCATGGCTCTGTCCCTATCTAAGAAGGTTCAATCAGGGAATGCGGCTCAGGTTCATAGCTCGCGACTCCCTG
GGTCGGGTCCTATTGTTGGGTGTGCGGCAATGGCAGTCGAAACAAATTCATCTCAGGTGTTTCACCTCCTCACCTCTGATATAGAGGATGAATCGGAGGTGGGTGGTGTT
GTTTCTTCCCTTAAGGTTGGCGCGTTTGGCTTTGGAGTTGTCCGATCTACAGGGTTGGGTGGAGGAGTGCTCACCGTCTGTTGCTCGTTGCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTGGTGCCTGCTACTTGTGTTTTTTTGTGCTGGTTTGGAGTCTAGGGATCATCTGTTTTTTGATTGCCCTTATAGTAGAGCGGTTTGGGCTGGTATGATTTCGTG
GGCAGGTTCGTCTCATCAGGGTTCATATTGGTCTACAGAGCTTTCTTGGATTTGTCATGTTAGTGCTGGGTCGTCTGTTCGGCGGCATGTATGGCGGTTAGCTTGGACTT
CGACTGTCTCTCTCCTTTGGAGGGAGCGGAACCTTCGTATTCATGGTGGTCAGGGTCGCTTGTCATCTGTGCTCCTTAGGGTCATGGTGGCGACGCTCGATGGTTTCGTG
AAGGAGAGGATGGATGAACTTGTTGATATGTGGAAGGGTTTAGATCTTTCAGATGAGAAGAATGAAGTTGTACAGGTTGGGTATGAAAGCAATTTGTTATCTGCTGATAG
TGTGGAGTTGTGTGCTGTGGCAAAGTGTAGTAGTGCACCTCTTTCTCTCTCAACATCCGACCAATCGTTCCAATATGGGGAGTGGCTGTGTGCCTCCGTTCTGAAAAGGG
GTTCGAATACGACTTCTAAGACTCATCTTGTGCGATCGACCAATCTTATGGCTTTGGGTGAGAACGACGACAAAGAGGACGAACATACCGGCGGTGGGGGTTCTGGGCGT
GAGCGGGCGATACCGCTTAACTTTGCTTTTGGGACAATGCCGGTGACCCACACGAAGTCAAAATGGAAGCGTCCTGCCAAGGTCAAAGCTGCGGTCCATCTAGAGAATAA
AATTTTGGGGAATAGGCCTCTTAGTTATGAAGGATCTGTCATGGCTCTGTCCCTATCTAAGAAGGTTCAATCAGGGAATGCGGCTCAGGTTCATAGCTCGCGACTCCCTG
GGTCGGGTCCTATTGTTGGGTGTGCGGCAATGGCAGTCGAAACAAATTCATCTCAGGTGTTTCACCTCCTCACCTCTGATATAGAGGATGAATCGGAGGTGGGTGGTGTT
GTTTCTTCCCTTAAGGTTGGCGCGTTTGGCTTTGGAGTTGTCCGATCTACAGGGTTGGGTGGAGGAGTGCTCACCGTCTGTTGCTCGTTGCATTGA
Protein sequenceShow/hide protein sequence
MRWCLLLVFFCAGLESRDHLFFDCPYSRAVWAGMISWAGSSHQGSYWSTELSWICHVSAGSSVRRHVWRLAWTSTVSLLWRERNLRIHGGQGRLSSVLLRVMVATLDGFV
KERMDELVDMWKGLDLSDEKNEVVQVGYESNLLSADSVELCAVAKCSSAPLSLSTSDQSFQYGEWLCASVLKRGSNTTSKTHLVRSTNLMALGENDDKEDEHTGGGGSGR
ERAIPLNFAFGTMPVTHTKSKWKRPAKVKAAVHLENKILGNRPLSYEGSVMALSLSKKVQSGNAAQVHSSRLPGSGPIVGCAAMAVETNSSQVFHLLTSDIEDESEVGGV
VSSLKVGAFGFGVVRSTGLGGGVLTVCCSLH