; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Moc01g00660 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g00660
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr1:434137..436228
RNA-Seq ExpressionMoc01g00660
SyntenyMoc01g00660
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151295.1 uncharacterized protein LOC111019259 [Momordica charantia]5.7e-3770.69Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  +   EKLNSENYKQ KSN+N I V++DLRFVLQE+ P APA + TVAV   YDRWIKAND A+VYIL SISNVLAKKHE+ +TAKEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
           SQAQHE LKF+YN
Subjt:  LPFSQAQHEALKFIYN

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]7.4e-4579.31Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  +   ++LN ENYKQWKSN+NTI V+DDL+FVLQEDCPQA APN TVAVR  YDRWIKAND AKVYILASIS+VLAKKHEDTITAKEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P SQA+HEALKFIYN
Subjt:  LPFSQAQHEALKFIYN

XP_022156751.1 uncharacterized protein LOC111023591 [Momordica charantia]2.8e-3667.24Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+AL+   +KLN +NY QWK+N+NTI VVDDLRFVL E CPQAP  N   A ++ YDRWIKAND AK+YILA+ISNVLAKKH+  +TA+EI+DSLQ MFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P  QA+H+ALKFIYN
Subjt:  LPFSQAQHEALKFIYN

XP_022158062.1 uncharacterized protein LOC111024637 [Momordica charantia]3.1e-4376.72Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  + V +KLN ENYKQWKSNINTI ++DDLRFVLQEDCPQAPAPN TVAVRN+YDRWIKAND AKV ILASIS+VLAKKHE+++  KEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P SQA+HEAL  IYN
Subjt:  LPFSQAQHEALKFIYN

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]4.8e-4475.86Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  +   +KLN ENY+QWKSN+NTI V+DDLRFVLQEDCPQAP  N TVAVRN YDRWIK+ND AKVYILASIS+VLAKKHEDT+T KEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P  QA+HEALKF+YN
Subjt:  LPFSQAQHEALKFIYN

TrEMBL top hitse value%identityAlignment
A0A6J1DAT1 uncharacterized protein LOC1110192592.8e-3770.69Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  +   EKLNSENYKQ KSN+N I V++DLRFVLQE+ P APA + TVAV   YDRWIKAND A+VYIL SISNVLAKKHE+ +TAKEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
           SQAQHE LKF+YN
Subjt:  LPFSQAQHEALKFIYN

A0A6J1DFZ2 uncharacterized protein LOC1110200953.6e-4579.31Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  +   ++LN ENYKQWKSN+NTI V+DDL+FVLQEDCPQA APN TVAVR  YDRWIKAND AKVYILASIS+VLAKKHEDTITAKEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P SQA+HEALKFIYN
Subjt:  LPFSQAQHEALKFIYN

A0A6J1DVX8 uncharacterized protein LOC1110235911.4e-3667.24Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+AL+   +KLN +NY QWK+N+NTI VVDDLRFVL E CPQAP  N   A ++ YDRWIKAND AK+YILA+ISNVLAKKH+  +TA+EI+DSLQ MFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P  QA+H+ALKFIYN
Subjt:  LPFSQAQHEALKFIYN

A0A6J1DW68 uncharacterized protein LOC1110246371.5e-4376.72Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  + V +KLN ENYKQWKSNINTI ++DDLRFVLQEDCPQAPAPN TVAVRN+YDRWIKAND AKV ILASIS+VLAKKHE+++  KEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P SQA+HEAL  IYN
Subjt:  LPFSQAQHEALKFIYN

A0A6J1DWL0 uncharacterized protein LOC1110247342.3e-4475.86Show/hide
Query:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG
        S+  +   +KLN ENY+QWKSN+NTI V+DDLRFVLQEDCPQAP  N TVAVRN YDRWIK+ND AKVYILASIS+VLAKKHEDT+T KEI+DSLQSMFG
Subjt:  SVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILASISNVLAKKHEDTITAKEIIDSLQSMFG

Query:  LPFSQAQHEALKFIYN
         P  QA+HEALKF+YN
Subjt:  LPFSQAQHEALKFIYN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCGTGCCTTAGCGCCATGGCGCTACTGCTGCAGTGTTTTATTGCAGTAGTATCGTGGCACTGCCCTTTGGCGCCGAGGCACTGTCCCAGTGTTTTTCGACGTGA
TTCCGTTGCTCTGGTTCGCGTCGTGGAAAAACTTAACAGCGAGAATTACAAACAATGGAAATCGAATATAAACACTATACAAGTGGTAGATGATCTTAGGTTCGTCTTGC
AAGAGGATTGTCCTCAAGCTCCTGCACCTAACACCACAGTGGCAGTGCGCAATGTCTATGACAGATGGATCAAGGCCAATGACAACGCTAAGGTCTACATCTTGGCTAGC
ATATCTAATGTGCTAGCTAAGAAGCACGAGGACACGATCACCGCTAAGGAGATCATCGACTCGCTGCAGAGCATGTTTGGACTACCGTTCTCACAGGCTCAACATGAAGC
CCTTAAGTTCATTTACAACTTCGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCGTGCCTTAGCGCCATGGCGCTACTGCTGCAGTGTTTTATTGCAGTAGTATCGTGGCACTGCCCTTTGGCGCCGAGGCACTGTCCCAGTGTTTTTCGACGTGA
TTCCGTTGCTCTGGTTCGCGTCGTGGAAAAACTTAACAGCGAGAATTACAAACAATGGAAATCGAATATAAACACTATACAAGTGGTAGATGATCTTAGGTTCGTCTTGC
AAGAGGATTGTCCTCAAGCTCCTGCACCTAACACCACAGTGGCAGTGCGCAATGTCTATGACAGATGGATCAAGGCCAATGACAACGCTAAGGTCTACATCTTGGCTAGC
ATATCTAATGTGCTAGCTAAGAAGCACGAGGACACGATCACCGCTAAGGAGATCATCGACTCGCTGCAGAGCATGTTTGGACTACCGTTCTCACAGGCTCAACATGAAGC
CCTTAAGTTCATTTACAACTTCGCATGA
Protein sequenceShow/hide protein sequence
MVSCLSAMALLLQCFIAVVSWHCPLAPRHCPSVFRRDSVALVRVVEKLNSENYKQWKSNINTIQVVDDLRFVLQEDCPQAPAPNTTVAVRNVYDRWIKANDNAKVYILAS
ISNVLAKKHEDTITAKEIIDSLQSMFGLPFSQAQHEALKFIYNFA