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Moc01g00910 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g00910
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:563576..565929
RNA-Seq ExpressionMoc01g00910
SyntenyMoc01g00910
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]4.3e-5075.18Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DYP RT+PP SHSFRSAG IH EYD SS VAAVTEE EQ  PFV+ CPDGFELSNWSV            NT+IECDN+SKY LDTPIYNIESD+EID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL
        DEPS ELLRMLEEEEKMLGPHEELTE +NLGSQAEAKE+++
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]3.3e-3463.36Show/hide
Query:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM
        LLSEYDIVYVT KAIKGSALADYLAQQPINDY  VKFDFPDEYISTIT                                  G+LY L  RLCFDCTHNM
Subjt:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM

Query:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM
         EYEACSMGVQAA+DM V++L+VFGDSMLV+
Subjt:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]6.2e-4937.59Show/hide
Query:  VTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEIDDEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQA
        +TEE EQ GPFV+  PDGFELSNWSVLEL SFVNNKSNNT+IECDN+SKY LDTPIYNIESDEE +DEPS ELLRML EEEKMLGPHEELTE +NLGSQA
Subjt:  VTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEIDDEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQA

Query:  EAKEVE---------------------------------------------------------------------------------------------L
        EAKE++                                                                                             L
Subjt:  EAKEVE---------------------------------------------------------------------------------------------L

Query:  QD--------------------------------------------------------------------------------------------------
        QD                                                                                                  
Subjt:  QD--------------------------------------------------------------------------------------------------

Query:  --GRF-----LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIV
          GR      LLSEYDIVYVT KAIKG ALADYLAQQPINDY  VKFDFPDEYISTITT                                 G+LY L  
Subjt:  --GRF-----LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIV

Query:  RLCFDCTHNMTEYEA
        RLCFDCTHNM EYEA
Subjt:  RLCFDCTHNMTEYEA

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]5.9e-6082.98Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DYP R +PP +HSFRSAG IH EYDESS VAAVTEE EQ GPFV+LCPDGFELSNWSV++LPSFVNNKSNNT+IECDN+SKY LDTPIY IESDEEID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL
        DEPS ELLRMLEEEEKMLGPHEELTE +NLGSQAEAKE+++
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.3e-3464.12Show/hide
Query:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM
        LLSEYDIVYVT KAIKGSALADYLAQQPINDY  VKFDFPDEYISTIT                                  G+LY LI RLCFDC HNM
Subjt:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM

Query:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM
         EYEACSMGVQAAIDM V++L+VFGDSMLV+
Subjt:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]3.8e-5975.47Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DYP RT+PP SHSFRSAGIIH EYDESS VA VTEE EQ GPFV+ CPDGFELSNWSVLELPSFVNNKSN  +IECDN+SKY LDTPIYNIESDEEID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVELQDGRFLLSEYDIVYVTHK
        DE S ELLRML EEEKMLGPHEELTE +NLGSQAEAKEV++       S   ++ + H+
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVELQDGRFLLSEYDIVYVTHK

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]8.0e-4973.76Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DY  RT+PP SHS RSAG IH EYDESS  AAVTEE EQ  PFV+ CPDGF+LSNWSV            NT+IECDN+SKY LDTPIYNIESDEEID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL
        DEPS ELLRMLEEEEKMLGPHEELTE +NLGSQAEAKE+++
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]6.8e-3262.6Show/hide
Query:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM
        LLSEYDIVYVT KAIKGSALADYLAQQPINDY  VKFDFPDEYISTIT                                  G+LY L  RLCFDCTHNM
Subjt:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM

Query:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM
         EYEACSMGVQAA+DM V + +VFGDSMLV+
Subjt:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H2.1e-5075.18Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DYP RT+PP SHSFRSAG IH EYD SS VAAVTEE EQ  PFV+ CPDGFELSNWSV            NT+IECDN+SKY LDTPIYNIESD+EID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL
        DEPS ELLRMLEEEEKMLGPHEELTE +NLGSQAEAKE+++
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL

A0A6J1CNY7 Ribonuclease H1.6e-3463.36Show/hide
Query:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM
        LLSEYDIVYVT KAIKGSALADYLAQQPINDY  VKFDFPDEYISTIT                                  G+LY L  RLCFDCTHNM
Subjt:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM

Query:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM
         EYEACSMGVQAA+DM V++L+VFGDSMLV+
Subjt:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM

A0A6J1CNY7 Ribonuclease H3.0e-4937.59Show/hide
Query:  VTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEIDDEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQA
        +TEE EQ GPFV+  PDGFELSNWSVLEL SFVNNKSNNT+IECDN+SKY LDTPIYNIESDEE +DEPS ELLRML EEEKMLGPHEELTE +NLGSQA
Subjt:  VTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEIDDEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQA

Query:  EAKEVE---------------------------------------------------------------------------------------------L
        EAKE++                                                                                             L
Subjt:  EAKEVE---------------------------------------------------------------------------------------------L

Query:  QD--------------------------------------------------------------------------------------------------
        QD                                                                                                  
Subjt:  QD--------------------------------------------------------------------------------------------------

Query:  --GRF-----LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIV
          GR      LLSEYDIVYVT KAIKG ALADYLAQQPINDY  VKFDFPDEYISTITT                                 G+LY L  
Subjt:  --GRF-----LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIV

Query:  RLCFDCTHNMTEYEA
        RLCFDCTHNM EYEA
Subjt:  RLCFDCTHNMTEYEA

A0A6J1D099 Ribonuclease H2.9e-6082.98Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DYP R +PP +HSFRSAG IH EYDESS VAAVTEE EQ GPFV+LCPDGFELSNWSV++LPSFVNNKSNNT+IECDN+SKY LDTPIY IESDEEID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL
        DEPS ELLRMLEEEEKMLGPHEELTE +NLGSQAEAKE+++
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL

A0A6J1D099 Ribonuclease H1.6e-3464.12Show/hide
Query:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM
        LLSEYDIVYVT KAIKGSALADYLAQQPINDY  VKFDFPDEYISTIT                                  G+LY LI RLCFDC HNM
Subjt:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM

Query:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM
         EYEACSMGVQAAIDM V++L+VFGDSMLV+
Subjt:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM

A0A6J1D099 Ribonuclease H1.9e-5975.47Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DYP RT+PP SHSFRSAGIIH EYDESS VA VTEE EQ GPFV+ CPDGFELSNWSVLELPSFVNNKSN  +IECDN+SKY LDTPIYNIESDEEID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVELQDGRFLLSEYDIVYVTHK
        DE S ELLRML EEEKMLGPHEELTE +NLGSQAEAKEV++       S   ++ + H+
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVELQDGRFLLSEYDIVYVTHK

A0A6J1D7C7 Ribonuclease H3.9e-4973.76Show/hide
Query:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID
        E DY  RT+PP SHS RSAG IH EYDESS  AAVTEE EQ  PFV+ CPDGF+LSNWSV            NT+IECDN+SKY LDTPIYNIESDEEID
Subjt:  EHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEID

Query:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL
        DEPS ELLRMLEEEEKMLGPHEELTE +NLGSQAEAKE+++
Subjt:  DEPSTELLRMLEEEEKMLGPHEELTEIVNLGSQAEAKEVEL

A0A6J1D7C7 Ribonuclease H3.3e-3262.6Show/hide
Query:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM
        LLSEYDIVYVT KAIKGSALADYLAQQPINDY  VKFDFPDEYISTIT                                  G+LY L  RLCFDCTHNM
Subjt:  LLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITT---------------------------------GDLYRLIVRLCFDCTHNM

Query:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM
         EYEACSMGVQAA+DM V + +VFGDSMLV+
Subjt:  TEYEACSMGVQAAIDMNVRRLQVFGDSMLVM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACGATTACCCAATGAGGACTATTCCACCTTTCAGCCACTCTTTCAGAAGTGCCGGCATAATCCATCATGAGTACGATGAGAGTTCTACAGTGGCAGCAGTGAC
AGAAGAAATAGAGCAAACTGGACCTTTTGTCTTCCTGTGCCCAGACGGTTTCGAGTTGAGCAATTGGAGTGTGTTAGAGCTACCGTCTTTTGTGAATAATAAGTCAAATA
ATACTCAGATTGAATGTGATAATAATTCGAAATACGTGCTCGATACACCTATATACAACATCGAGTCTGATGAGGAAATAGATGATGAGCCCTCAACTGAGTTATTGAGA
ATGCTAGAAGAAGAAGAAAAGATGTTGGGACCTCATGAGGAATTAACTGAGATAGTTAACTTAGGGTCACAAGCCGAGGCCAAAGAGGTTGAATTGCAAGATGGAAGGTT
TCTCTTGTCTGAATATGATATTGTCTATGTGACTCACAAGGCCATTAAAGGGAGTGCTCTAGCCGACTACTTAGCTCAACAACCTATAAATGACTACAAATCGGTGAAGT
TCGACTTTCCAGATGAGTATATCTCCACCATAACCACAGGGGATCTATACCGTCTTATTGTCAGGTTATGTTTTGACTGCACACATAATATGACTGAGTATGAAGCATGC
TCCATGGGTGTCCAAGCTGCTATTGATATGAACGTCAGGAGACTCCAAGTTTTTGGGGATTCCATGCTAGTAATGTTGGGTTTTATGCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACGATTACCCAATGAGGACTATTCCACCTTTCAGCCACTCTTTCAGAAGTGCCGGCATAATCCATCATGAGTACGATGAGAGTTCTACAGTGGCAGCAGTGAC
AGAAGAAATAGAGCAAACTGGACCTTTTGTCTTCCTGTGCCCAGACGGTTTCGAGTTGAGCAATTGGAGTGTGTTAGAGCTACCGTCTTTTGTGAATAATAAGTCAAATA
ATACTCAGATTGAATGTGATAATAATTCGAAATACGTGCTCGATACACCTATATACAACATCGAGTCTGATGAGGAAATAGATGATGAGCCCTCAACTGAGTTATTGAGA
ATGCTAGAAGAAGAAGAAAAGATGTTGGGACCTCATGAGGAATTAACTGAGATAGTTAACTTAGGGTCACAAGCCGAGGCCAAAGAGGTTGAATTGCAAGATGGAAGGTT
TCTCTTGTCTGAATATGATATTGTCTATGTGACTCACAAGGCCATTAAAGGGAGTGCTCTAGCCGACTACTTAGCTCAACAACCTATAAATGACTACAAATCGGTGAAGT
TCGACTTTCCAGATGAGTATATCTCCACCATAACCACAGGGGATCTATACCGTCTTATTGTCAGGTTATGTTTTGACTGCACACATAATATGACTGAGTATGAAGCATGC
TCCATGGGTGTCCAAGCTGCTATTGATATGAACGTCAGGAGACTCCAAGTTTTTGGGGATTCCATGCTAGTAATGTTGGGTTTTATGCCCTAA
Protein sequenceShow/hide protein sequence
MEHDYPMRTIPPFSHSFRSAGIIHHEYDESSTVAAVTEEIEQTGPFVFLCPDGFELSNWSVLELPSFVNNKSNNTQIECDNNSKYVLDTPIYNIESDEEIDDEPSTELLR
MLEEEEKMLGPHEELTEIVNLGSQAEAKEVELQDGRFLLSEYDIVYVTHKAIKGSALADYLAQQPINDYKSVKFDFPDEYISTITTGDLYRLIVRLCFDCTHNMTEYEAC
SMGVQAAIDMNVRRLQVFGDSMLVMLGFMP