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Moc01g00930 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g00930
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:568639..570144
RNA-Seq ExpressionMoc01g00930
SyntenyMoc01g00930
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]1.2e-5581.48Show/hide
Query:  MQQNTTYNPLYDILVGQYPPPFVKGTQQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGL
        M Q TTYNPLYD+ VGQY  PFVKG QQIPTNIIFREPEQMM PPTVLNLG LL KTDPVGQ+ PSNEKFEVL+ERL A+E TDVFGNIDASQLC +SGL
Subjt:  MQQNTTYNPLYDILVGQYPPPFVKGTQQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGL

Query:  VILLKFKVPEFEKYDGSSCPKNHLIMYCKNMAAYV
        VI  K KVPEFEKY+GSSCPKNHL MYC+ MAAYV
Subjt:  VILLKFKVPEFEKYDGSSCPKNHLIMYCKNMAAYV

XP_022147190.1 uncharacterized protein LOC111016201 [Momordica charantia]3.1e-5348.89Show/hide
Query:  PSTHDLRNSEFAFDIEFCTNNIQEVVKAWKTIVRIQSGNYHDNTFKGYGQWHSSRGKTVVLLPTDKGKGKLEVPTKRILTVMSPNQPTQQKVRGIEYELR
        P+THDLRNSEFA+DI FC N IQEVVKAWKTIVRIQSGNYHDN F+GY +WHSSRGKTVVLLPTDKGKGKLEVPT+RIL+ MSPNQ TQ+K         
Subjt:  PSTHDLRNSEFAFDIEFCTNNIQEVVKAWKTIVRIQSGNYHDNTFKGYGQWHSSRGKTVVLLPTDKGKGKLEVPTKRILTVMSPNQPTQQKVRGIEYELR

Query:  EGNPTSAKERLQLGFHQSLPRSIELKLQQARREVGIVLEEKEVQLPQYAQENQRLRETIQALMSCLDKTQNAADGLMRDYAHIREQYNQVGTCAHPSQTG
                                                                                  GL +           +     P +T 
Subjt:  EGNPTSAKERLQLGFHQSLPRSIELKLQQARREVGIVLEEKEVQLPQYAQENQRLRETIQALMSCLDKTQNAADGLMRDYAHIREQYNQVGTCAHPSQTG

Query:  SSKGRWFSCRARIIMKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPL
         ++      RAR++M+DQKAEQEK RKDIEELREKLDVILLALEKGK+ ADP TSSNPVH+ QE PPYPL
Subjt:  SSKGRWFSCRARIIMKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPL

XP_022149382.1 uncharacterized protein LOC111017812 [Momordica charantia]5.1e-112100Show/hide
Query:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT
        MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT
Subjt:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT

Query:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM
        NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM
Subjt:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM

Query:  AAYV
        AAYV
Subjt:  AAYV

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.7e-7066.99Show/hide
Query:  DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYD-------PPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGT
        D+K+EQEK RKDIEELREKLD ILLALEKGKT+A+   +SNP+H +   P +P G++       P  R + EGFM Q TTYNPLYDI  GQ+PPP V+G 
Subjt:  DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYD-------PPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGT

Query:  QQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIM
         Q P  IIF+EPEQ++ PPTVLNLGG     DP  Q  PS+EK EVLEERL AVEGTDVFGNIDASQLCL SGLVI  KFK+PEFEKY+GSSCPKNHLIM
Subjt:  QQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIM

Query:  YCKNMAAYV
        YC+ MAAY+
Subjt:  YCKNMAAYV

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.7e-8679.41Show/hide
Query:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT
        M+DQKAEQEK RKDIEELREKLD I L LEKGK  ADP TSSNP+H+ QE PPYP GY PPLR VAEGFM Q TTYNPLYD+ +GQYP  FVKG QQIPT
Subjt:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT

Query:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM
        NIIFREPEQMM PPTV NLGG   KTDPV Q+  S EK EVLEERL A+EGTDVFGNIDASQLCL+SGLVI  KFKVPEFEKYDGSSCPKNHLIMYC+ M
Subjt:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM

Query:  AAYV
         AYV
Subjt:  AAYV

TrEMBL top hitse value%identityAlignment
A0A6J1CZG4 uncharacterized protein LOC1110162011.5e-5348.89Show/hide
Query:  PSTHDLRNSEFAFDIEFCTNNIQEVVKAWKTIVRIQSGNYHDNTFKGYGQWHSSRGKTVVLLPTDKGKGKLEVPTKRILTVMSPNQPTQQKVRGIEYELR
        P+THDLRNSEFA+DI FC N IQEVVKAWKTIVRIQSGNYHDN F+GY +WHSSRGKTVVLLPTDKGKGKLEVPT+RIL+ MSPNQ TQ+K         
Subjt:  PSTHDLRNSEFAFDIEFCTNNIQEVVKAWKTIVRIQSGNYHDNTFKGYGQWHSSRGKTVVLLPTDKGKGKLEVPTKRILTVMSPNQPTQQKVRGIEYELR

Query:  EGNPTSAKERLQLGFHQSLPRSIELKLQQARREVGIVLEEKEVQLPQYAQENQRLRETIQALMSCLDKTQNAADGLMRDYAHIREQYNQVGTCAHPSQTG
                                                                                  GL +           +     P +T 
Subjt:  EGNPTSAKERLQLGFHQSLPRSIELKLQQARREVGIVLEEKEVQLPQYAQENQRLRETIQALMSCLDKTQNAADGLMRDYAHIREQYNQVGTCAHPSQTG

Query:  SSKGRWFSCRARIIMKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPL
         ++      RAR++M+DQKAEQEK RKDIEELREKLDVILLALEKGK+ ADP TSSNPVH+ QE PPYPL
Subjt:  SSKGRWFSCRARIIMKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPL

A0A6J1D099 Ribonuclease H5.6e-5681.48Show/hide
Query:  MQQNTTYNPLYDILVGQYPPPFVKGTQQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGL
        M Q TTYNPLYD+ VGQY  PFVKG QQIPTNIIFREPEQMM PPTVLNLG LL KTDPVGQ+ PSNEKFEVL+ERL A+E TDVFGNIDASQLC +SGL
Subjt:  MQQNTTYNPLYDILVGQYPPPFVKGTQQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGL

Query:  VILLKFKVPEFEKYDGSSCPKNHLIMYCKNMAAYV
        VI  K KVPEFEKY+GSSCPKNHL MYC+ MAAYV
Subjt:  VILLKFKVPEFEKYDGSSCPKNHLIMYCKNMAAYV

A0A6J1D7T3 uncharacterized protein LOC1110178122.5e-112100Show/hide
Query:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT
        MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT
Subjt:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT

Query:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM
        NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM
Subjt:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM

Query:  AAYV
        AAYV
Subjt:  AAYV

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.0e-7067.46Show/hide
Query:  DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYD-------PPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGT
        D+K+EQEK RKDIEELREKLD ILLALEKGKT+A+   +SNP+H +   P +P G++       P  R + EGFM Q TTYNPLYDI  GQ+PPP V+G 
Subjt:  DQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYD-------PPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGT

Query:  QQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIM
         Q P  IIF+EPEQ++ PPTVLNLGG     DP  Q  PS+EK EVLEERL AVEGTDVFGNIDASQLCL SGLVI  KFK+PEFEKYDGSSCPKNHLIM
Subjt:  QQIPTNIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIM

Query:  YCKNMAAYV
        YC+ MAAY+
Subjt:  YCKNMAAYV

A0A6J1DZ90 Ribonuclease H1.8e-8679.41Show/hide
Query:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT
        M+DQKAEQEK RKDIEELREKLD I L LEKGK  ADP TSSNP+H+ QE PPYP GY PPLR VAEGFM Q TTYNPLYD+ +GQYP  FVKG QQIPT
Subjt:  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPT

Query:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM
        NIIFREPEQMM PPTV NLGG   KTDPV Q+  S EK EVLEERL A+EGTDVFGNIDASQLCL+SGLVI  KFKVPEFEKYDGSSCPKNHLIMYC+ M
Subjt:  NIIFREPEQMMPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNM

Query:  AAYV
         AYV
Subjt:  AAYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTACGTCAGTTTATCCCAGCACACATGATTTAAGAAACTCTGAATTTGCCTTTGATATTGAATTTTGCACAAACAACATTCAAGAGGTCGTAAAGGCATGGAAAAC
GATTGTCAGAATACAAAGTGGCAATTACCATGATAATACATTTAAAGGATACGGACAGTGGCATTCGAGTAGGGGAAAAACTGTGGTTCTCCTACCAACTGACAAGGGCA
AAGGGAAGCTAGAGGTTCCCACTAAGAGAATTCTTACCGTAATGAGCCCAAATCAGCCCACTCAGCAGAAGGTTCGCGGGATAGAATACGAGCTGCGAGAAGGGAACCCC
ACATCAGCTAAAGAAAGACTACAACTAGGGTTCCATCAAAGTTTACCTCGAAGCATTGAGTTAAAATTGCAGCAGGCAAGAAGGGAGGTCGGCATTGTGTTGGAGGAGAA
AGAAGTACAGTTACCTCAGTATGCTCAAGAAAATCAAAGATTGAGGGAAACTATTCAGGCGCTTATGAGCTGTCTTGACAAAACTCAGAATGCTGCTGATGGGTTAATGC
GAGATTATGCCCATATTAGGGAACAATACAACCAAGTGGGAACATGTGCTCACCCAAGTCAGACAGGCAGCTCGAAGGGCAGATGGTTTAGCTGTAGGGCGAGAATAATA
ATGAAAGATCAAAAAGCTGAGCAGGAGAAAATAAGGAAAGATATTGAGGAGTTGCGTGAAAAGTTAGATGTCATCCTCCTCGCGTTGGAAAAAGGCAAGACGGTTGCGGA
TCCTACTACATCTAGCAACCCCGTGCATGACCAGCAAGAAATCCCGCCTTATCCACTTGGGTACGATCCACCTCTTAGGCTAGTAGCAGAGGGTTTCATGCAACAAAATA
CAACGTACAACCCTCTGTATGATATTCTGGTTGGTCAGTATCCACCTCCCTTTGTTAAGGGAACTCAGCAAATCCCAACCAACATCATTTTTCGAGAGCCCGAGCAAATG
ATGCCACCCCCTACAGTCCTTAATCTTGGTGGTCTCCTAGTCAAGACAGACCCAGTCGGACAAAGTACCCCCAGTAACGAGAAATTCGAAGTTCTAGAGGAAAGATTAAT
AGCAGTAGAAGGGACAGACGTTTTTGGCAACATCGATGCATCTCAGTTGTGTTTGATATCTGGATTAGTCATCCTTCTGAAGTTTAAGGTGCCAGAATTCGAGAAATATG
ATGGTTCTTCTTGTCCTAAGAACCACCTTATAATGTACTGCAAGAATATGGCAGCGTACGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTACGTCAGTTTATCCCAGCACACATGATTTAAGAAACTCTGAATTTGCCTTTGATATTGAATTTTGCACAAACAACATTCAAGAGGTCGTAAAGGCATGGAAAAC
GATTGTCAGAATACAAAGTGGCAATTACCATGATAATACATTTAAAGGATACGGACAGTGGCATTCGAGTAGGGGAAAAACTGTGGTTCTCCTACCAACTGACAAGGGCA
AAGGGAAGCTAGAGGTTCCCACTAAGAGAATTCTTACCGTAATGAGCCCAAATCAGCCCACTCAGCAGAAGGTTCGCGGGATAGAATACGAGCTGCGAGAAGGGAACCCC
ACATCAGCTAAAGAAAGACTACAACTAGGGTTCCATCAAAGTTTACCTCGAAGCATTGAGTTAAAATTGCAGCAGGCAAGAAGGGAGGTCGGCATTGTGTTGGAGGAGAA
AGAAGTACAGTTACCTCAGTATGCTCAAGAAAATCAAAGATTGAGGGAAACTATTCAGGCGCTTATGAGCTGTCTTGACAAAACTCAGAATGCTGCTGATGGGTTAATGC
GAGATTATGCCCATATTAGGGAACAATACAACCAAGTGGGAACATGTGCTCACCCAAGTCAGACAGGCAGCTCGAAGGGCAGATGGTTTAGCTGTAGGGCGAGAATAATA
ATGAAAGATCAAAAAGCTGAGCAGGAGAAAATAAGGAAAGATATTGAGGAGTTGCGTGAAAAGTTAGATGTCATCCTCCTCGCGTTGGAAAAAGGCAAGACGGTTGCGGA
TCCTACTACATCTAGCAACCCCGTGCATGACCAGCAAGAAATCCCGCCTTATCCACTTGGGTACGATCCACCTCTTAGGCTAGTAGCAGAGGGTTTCATGCAACAAAATA
CAACGTACAACCCTCTGTATGATATTCTGGTTGGTCAGTATCCACCTCCCTTTGTTAAGGGAACTCAGCAAATCCCAACCAACATCATTTTTCGAGAGCCCGAGCAAATG
ATGCCACCCCCTACAGTCCTTAATCTTGGTGGTCTCCTAGTCAAGACAGACCCAGTCGGACAAAGTACCCCCAGTAACGAGAAATTCGAAGTTCTAGAGGAAAGATTAAT
AGCAGTAGAAGGGACAGACGTTTTTGGCAACATCGATGCATCTCAGTTGTGTTTGATATCTGGATTAGTCATCCTTCTGAAGTTTAAGGTGCCAGAATTCGAGAAATATG
ATGGTTCTTCTTGTCCTAAGAACCACCTTATAATGTACTGCAAGAATATGGCAGCGTACGTCTAA
Protein sequenceShow/hide protein sequence
MGTSVYPSTHDLRNSEFAFDIEFCTNNIQEVVKAWKTIVRIQSGNYHDNTFKGYGQWHSSRGKTVVLLPTDKGKGKLEVPTKRILTVMSPNQPTQQKVRGIEYELREGNP
TSAKERLQLGFHQSLPRSIELKLQQARREVGIVLEEKEVQLPQYAQENQRLRETIQALMSCLDKTQNAADGLMRDYAHIREQYNQVGTCAHPSQTGSSKGRWFSCRARII
MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDPPLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKGTQQIPTNIIFREPEQM
MPPPTVLNLGGLLVKTDPVGQSTPSNEKFEVLEERLIAVEGTDVFGNIDASQLCLISGLVILLKFKVPEFEKYDGSSCPKNHLIMYCKNMAAYV