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Moc01g01230 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g01230
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:921466..927751
RNA-Seq ExpressionMoc01g01230
SyntenyMoc01g01230
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022136647.1 uncharacterized protein LOC111008302 [Momordica charantia]5.1e-3130.9Show/hide
Query:  DKPTRGTLA--EELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWS---------------------------TRASCSRKPSSQYPEDRE-
        D P R + A  EELELV LLSP KQVSIGTK+GA  + ELI+FLR+N DVFAWS                            R   +++ S    E+ E 
Subjt:  DKPTRGTLA--EELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWS---------------------------TRASCSRKPSSQYPEDRE-

Query:  ---------EDFVVALV-------------------ATLKRC----------------------LQRSKHTHLRASTAGSDV-------------NDMLV
                  DF+  L                    +  K C                         +      A  AG  +             +  LV
Subjt:  ---------EDFVVALV-------------------ATLKRC----------------------LQRSKHTHLRASTAGSDV-------------NDMLV

Query:  KSK------------------------QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWVPS---------
         S+                        QF+ Y + +V R+ENSN DALA+LASAYET L R+V VE+L+   I +         E +W+           
Subjt:  KSK------------------------QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWVPS---------

Query:  -------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHR
                                        LLR   P+E  Y ++EIHEGVCGN+S A S++ K+I QGYYWP+L  D K+FV+  D CQR  +I H+
Subjt:  -------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHR

Query:  PPELLTSISSP
        PPELLT IS+P
Subjt:  PPELLTSISSP

XP_022149378.1 uncharacterized protein LOC111017809 [Momordica charantia]3.0e-3134.11Show/hide
Query:  MKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCA-----------AITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANV
        +KY T  G+ IVRGE++MSR CYA ALKG + CA               ++P   K       EELELV LLSP +QVSIGTK+GA  + E INFLR N 
Subjt:  MKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCA-----------AITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANV

Query:  DVFAWSTRASCSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRA---------------STAGSDVNDMLVKSK----QFKEYVIHQVSRSENSN
        +VFAWS        P      +       AL+A L R  +  +  H++                    S +   L K +    Q K Y ++QV RSENSN
Subjt:  DVFAWSTRASCSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRA---------------STAGSDVNDMLVKSK----QFKEYVIHQVSRSENSN

Query:  VDALARLASAYETELPRAVQVEVLNESFI--------DQAEEAW-------------------------VPSHLLRH-----------------PDEANY
         DALA+LASAYET+L R+V VE+L+   I        D    +W                         V   +LR                  P++ NY
Subjt:  VDALARLASAYETELPRAVQVEVLNESFI--------DQAEEAW-------------------------VPSHLLRH-----------------PDEANY

Query:  AMKEIHEGVCGNYSSAL--------------SMAFKIIGQGYY
         ++EIHEGVCGN+S A                MA + +G GY+
Subjt:  AMKEIHEGVCGNYSSAL--------------SMAFKIIGQGYY

XP_022156792.1 uncharacterized protein LOC111023626 [Momordica charantia]4.5e-3554.14Show/hide
Query:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSHLLRHPDEANYAMKEIHEGVC
        QF++YVI QV RS+NSN DALARLASAYET+LPR V VE+L ES IDQ        A+  W+               PS  L  P+EA Y M+EIHEGVC
Subjt:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSHLLRHPDEANYAMKEIHEGVC

Query:  GNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP
        GN+  A S A K++ QGYYWP+++ D K+F K   KCQR ASI  +PPE+LT ISSP
Subjt:  GNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]1.0e-3146.49Show/hide
Query:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSH--------------------
        QF++YVI QV RSENSN D LARLASAY+T+LPR V VE+L ES +DQ        A+  W+               PS                     
Subjt:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSH--------------------

Query:  ------LLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP
              LLR   P+EA Y M+EIHEGVCGN+  A SMA K++ QGYYW +++ D K+F K  DKCQR ASI  +PPE+LT ISSP
Subjt:  ------LLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP

XP_022158219.1 protein NYNRIN-like [Momordica charantia]3.5e-3232.64Show/hide
Query:  MMKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCAAITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWSTRAS
        ++KY T  G+  VRGE+  SR CYA ALKGS+ CA               +  E LE  + L P ++ S  T+     + EL+  L     VF  S    
Subjt:  MMKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCAAITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWSTRAS

Query:  CSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRASTAGSDVNDMLVKSKQFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFI
           K   Q  + R E ++  + + L                             QF  Y + ++ R+ENSN DALA+LASAYET+L R+V VE+L+   I
Subjt:  CSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRASTAGSDVNDMLVKSKQFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFI

Query:  DQ--------AEEAWVPS----------------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYY
         +         E +W+                                           LLR   P+E  Y ++E+HEGVCGN+S A S++ K+I QGYY
Subjt:  DQ--------AEEAWVPS----------------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYY

Query:  WPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISS
        WP+L  DAK+FV+  D CQR  ++ H+PPELLT IS+
Subjt:  WPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISS

TrEMBL top hitse value%identityAlignment
A0A6J1C617 Ribonuclease H2.5e-3130.9Show/hide
Query:  DKPTRGTLA--EELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWS---------------------------TRASCSRKPSSQYPEDRE-
        D P R + A  EELELV LLSP KQVSIGTK+GA  + ELI+FLR+N DVFAWS                            R   +++ S    E+ E 
Subjt:  DKPTRGTLA--EELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWS---------------------------TRASCSRKPSSQYPEDRE-

Query:  ---------EDFVVALV-------------------ATLKRC----------------------LQRSKHTHLRASTAGSDV-------------NDMLV
                  DF+  L                    +  K C                         +      A  AG  +             +  LV
Subjt:  ---------EDFVVALV-------------------ATLKRC----------------------LQRSKHTHLRASTAGSDV-------------NDMLV

Query:  KSK------------------------QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWVPS---------
         S+                        QF+ Y + +V R+ENSN DALA+LASAYET L R+V VE+L+   I +         E +W+           
Subjt:  KSK------------------------QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWVPS---------

Query:  -------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHR
                                        LLR   P+E  Y ++EIHEGVCGN+S A S++ K+I QGYYWP+L  D K+FV+  D CQR  +I H+
Subjt:  -------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHR

Query:  PPELLTSISSP
        PPELLT IS+P
Subjt:  PPELLTSISSP

A0A6J1D6M1 Ribonuclease H1.4e-3134.11Show/hide
Query:  MKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCA-----------AITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANV
        +KY T  G+ IVRGE++MSR CYA ALKG + CA               ++P   K       EELELV LLSP +QVSIGTK+GA  + E INFLR N 
Subjt:  MKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCA-----------AITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANV

Query:  DVFAWSTRASCSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRA---------------STAGSDVNDMLVKSK----QFKEYVIHQVSRSENSN
        +VFAWS        P      +       AL+A L R  +  +  H++                    S +   L K +    Q K Y ++QV RSENSN
Subjt:  DVFAWSTRASCSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRA---------------STAGSDVNDMLVKSK----QFKEYVIHQVSRSENSN

Query:  VDALARLASAYETELPRAVQVEVLNESFI--------DQAEEAW-------------------------VPSHLLRH-----------------PDEANY
         DALA+LASAYET+L R+V VE+L+   I        D    +W                         V   +LR                  P++ NY
Subjt:  VDALARLASAYETELPRAVQVEVLNESFI--------DQAEEAW-------------------------VPSHLLRH-----------------PDEANY

Query:  AMKEIHEGVCGNYSSAL--------------SMAFKIIGQGYY
         ++EIHEGVCGN+S A                MA + +G GY+
Subjt:  AMKEIHEGVCGNYSSAL--------------SMAFKIIGQGYY

A0A6J1DSX0 uncharacterized protein LOC1110236262.2e-3554.14Show/hide
Query:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSHLLRHPDEANYAMKEIHEGVC
        QF++YVI QV RS+NSN DALARLASAYET+LPR V VE+L ES IDQ        A+  W+               PS  L  P+EA Y M+EIHEGVC
Subjt:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSHLLRHPDEANYAMKEIHEGVC

Query:  GNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP
        GN+  A S A K++ QGYYWP+++ D K+F K   KCQR ASI  +PPE+LT ISSP
Subjt:  GNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP

A0A6J1DWM2 Ribonuclease H5.0e-3246.49Show/hide
Query:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSH--------------------
        QF++YVI QV RSENSN D LARLASAY+T+LPR V VE+L ES +DQ        A+  W+               PS                     
Subjt:  QFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQ--------AEEAWV---------------PSH--------------------

Query:  ------LLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP
              LLR   P+EA Y M+EIHEGVCGN+  A SMA K++ QGYYW +++ D K+F K  DKCQR ASI  +PPE+LT ISSP
Subjt:  ------LLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP

A0A6J1DYS0 Ribonuclease H1.7e-3232.64Show/hide
Query:  MMKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCAAITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWSTRAS
        ++KY T  G+  VRGE+  SR CYA ALKGS+ CA               +  E LE  + L P ++ S  T+     + EL+  L     VF  S    
Subjt:  MMKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCAAITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWSTRAS

Query:  CSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRASTAGSDVNDMLVKSKQFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFI
           K   Q  + R E ++  + + L                             QF  Y + ++ R+ENSN DALA+LASAYET+L R+V VE+L+   I
Subjt:  CSRKPSSQYPEDREEDFVVALVATLKRCLQRSKHTHLRASTAGSDVNDMLVKSKQFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFI

Query:  DQ--------AEEAWVPS----------------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYY
         +         E +W+                                           LLR   P+E  Y ++E+HEGVCGN+S A S++ K+I QGYY
Subjt:  DQ--------AEEAWVPS----------------------------------------HLLR--HPDEANYAMKEIHEGVCGNYSSALSMAFKIIGQGYY

Query:  WPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISS
        WP+L  DAK+FV+  D CQR  ++ H+PPELLT IS+
Subjt:  WPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGTATCCGACTGCTGTTGGGATAGCCATCGTCCGAGGCGAGGAGAAGATGTCGAGAGGGTGTTATGCCATAGCATTAAAAGGCTCAGCCACATGTGCAGCCAT
CACAACTGAGGTCCCGCCGCCGGATAAGCCGACCCGTGGGACGCTAGCAGAAGAACTAGAGCTTGTGTCGCTCCTGAGCCCAAACAAGCAAGTTAGCATCGGCACTAAGG
TGGGGGCAGAGACAAAAACTGAACTCATCAACTTCCTACGAGCAAATGTCGACGTCTTTGCATGGTCGACCCGAGCATCATGTTCCCGCAAACCGAGTTCTCAATATCCA
GAGGATAGAGAGGAAGACTTTGTGGTGGCATTGGTGGCTACATTGAAGAGGTGTCTTCAAAGATCGAAGCACACGCATTTGCGCGCTTCCACTGCGGGATCCGATGTCAA
TGACATGCTTGTTAAGAGCAAGCAGTTCAAGGAGTACGTGATTCACCAAGTCTCGAGATCGGAAAACTCGAACGTTGATGCTCTAGCTCGGCTAGCCTCAGCATACGAGA
CAGAGTTACCTCGTGCAGTCCAAGTGGAAGTCCTGAATGAATCATTCATCGACCAGGCCGAGGAAGCTTGGGTGCCGAGCCACTTACTACGTCATCCAGATGAAGCGAAC
TATGCCATGAAAGAAATTCACGAGGGAGTTTGCGGCAACTATTCAAGTGCTTTGTCCATGGCCTTCAAAATAATTGGGCAAGGCTACTATTGGCCGAGCCTAGACCATGA
TGCGAAACAATTCGTGAAGAAGTACGACAAGTGCCAACGCTTAGCTAGCATACCGCACCGACCTCCAGAACTCCTCACTTCTATCTCAAGCCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGTATCCGACTGCTGTTGGGATAGCCATCGTCCGAGGCGAGGAGAAGATGTCGAGAGGGTGTTATGCCATAGCATTAAAAGGCTCAGCCACATGTGCAGCCAT
CACAACTGAGGTCCCGCCGCCGGATAAGCCGACCCGTGGGACGCTAGCAGAAGAACTAGAGCTTGTGTCGCTCCTGAGCCCAAACAAGCAAGTTAGCATCGGCACTAAGG
TGGGGGCAGAGACAAAAACTGAACTCATCAACTTCCTACGAGCAAATGTCGACGTCTTTGCATGGTCGACCCGAGCATCATGTTCCCGCAAACCGAGTTCTCAATATCCA
GAGGATAGAGAGGAAGACTTTGTGGTGGCATTGGTGGCTACATTGAAGAGGTGTCTTCAAAGATCGAAGCACACGCATTTGCGCGCTTCCACTGCGGGATCCGATGTCAA
TGACATGCTTGTTAAGAGCAAGCAGTTCAAGGAGTACGTGATTCACCAAGTCTCGAGATCGGAAAACTCGAACGTTGATGCTCTAGCTCGGCTAGCCTCAGCATACGAGA
CAGAGTTACCTCGTGCAGTCCAAGTGGAAGTCCTGAATGAATCATTCATCGACCAGGCCGAGGAAGCTTGGGTGCCGAGCCACTTACTACGTCATCCAGATGAAGCGAAC
TATGCCATGAAAGAAATTCACGAGGGAGTTTGCGGCAACTATTCAAGTGCTTTGTCCATGGCCTTCAAAATAATTGGGCAAGGCTACTATTGGCCGAGCCTAGACCATGA
TGCGAAACAATTCGTGAAGAAGTACGACAAGTGCCAACGCTTAGCTAGCATACCGCACCGACCTCCAGAACTCCTCACTTCTATCTCAAGCCCCTGA
Protein sequenceShow/hide protein sequence
MMKYPTAVGIAIVRGEEKMSRGCYAIALKGSATCAAITTEVPPPDKPTRGTLAEELELVSLLSPNKQVSIGTKVGAETKTELINFLRANVDVFAWSTRASCSRKPSSQYP
EDREEDFVVALVATLKRCLQRSKHTHLRASTAGSDVNDMLVKSKQFKEYVIHQVSRSENSNVDALARLASAYETELPRAVQVEVLNESFIDQAEEAWVPSHLLRHPDEAN
YAMKEIHEGVCGNYSSALSMAFKIIGQGYYWPSLDHDAKQFVKKYDKCQRLASIPHRPPELLTSISSP