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Moc01g01500 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g01500
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:1055811..1056415
RNA-Seq ExpressionMoc01g01500
SyntenyMoc01g01500
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]1.3e-1554.43Show/hide
Query:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        G  + I+CR FS TLTG    W++QLKR+SI+SF+EL RAF+ QF G   + RP  YLLT++QKA ESL++Y+  FN E
Subjt:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]7.8e-1653.16Show/hide
Query:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        G  + +KCR FS TL+G A  W+RQLKR SI+SF+ L +AF+ QF+G R + RP  YLLT++Q+A ESL +Y+  FN E
Subjt:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]3.7e-1862.34Show/hide
Query:  RDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        R+ I+CR FS TLTG A  W+RQLKR SI+SF+EL  AF+ QFVG R K +P TYLLT++QKA ESL+EY+  FN E
Subjt:  RDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.3e-1554.43Show/hide
Query:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        G  + ++CR FS TL G A  W+RQLKR SI+SF+ L RAF+ QFVG R + RP  YLLT++Q+  ESLR+Y+  FN E
Subjt:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.5e-1438.61Show/hide
Query:  ENRRKEHESRGQ-LNLRDLLNHRRQIPTEERPGVTLSNHNGYPDKVANEEEPRDGLCTPFADNVMA--------GARDEIKCRAFSLTLTGPASTWYRQL
        E+  K H  + +  +L +LL       TEE     +      P       +P DG+  P  D++ A        G  D I+CR FS TL G A  W+RQL
Subjt:  ENRRKEHESRGQ-LNLRDLLNHRRQIPTEERPGVTLSNHNGYPDKVANEEEPRDGLCTPFADNVMA--------GARDEIKCRAFSLTLTGPASTWYRQL

Query:  KRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNEASKLK
        KR SI+SF+ L RAF+ QFVG R + RP  YLLT++Q+  ESL +Y+  FN E  +L+
Subjt:  KRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNEASKLK

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166196.4e-1654.43Show/hide
Query:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        G  + I+CR FS TLTG    W++QLKR+SI+SF+EL RAF+ QF G   + RP  YLLT++QKA ESL++Y+  FN E
Subjt:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

A0A6J1D7D2 uncharacterized protein LOC1110183073.8e-1653.16Show/hide
Query:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        G  + +KCR FS TL+G A  W+RQLKR SI+SF+ L +AF+ QF+G R + RP  YLLT++Q+A ESL +Y+  FN E
Subjt:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

A0A6J1DWY0 uncharacterized protein LOC1110252931.1e-1554.43Show/hide
Query:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        G  + ++CR FS TL G A  W+RQLKR SI+SF+ L RAF+ QFVG R + RP  YLLT++Q+  ESLR+Y+  FN E
Subjt:  GARDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

A0A6J1DZ49 uncharacterized protein LOC1110248511.8e-1862.34Show/hide
Query:  RDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE
        R+ I+CR FS TLTG A  W+RQLKR SI+SF+EL  AF+ QFVG R K +P TYLLT++QKA ESL+EY+  FN E
Subjt:  RDEIKCRAFSLTLTGPASTWYRQLKRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNE

A0A6J1E1E7 uncharacterized protein LOC1110255487.1e-1538.61Show/hide
Query:  ENRRKEHESRGQ-LNLRDLLNHRRQIPTEERPGVTLSNHNGYPDKVANEEEPRDGLCTPFADNVMA--------GARDEIKCRAFSLTLTGPASTWYRQL
        E+  K H  + +  +L +LL       TEE     +      P       +P DG+  P  D++ A        G  D I+CR FS TL G A  W+RQL
Subjt:  ENRRKEHESRGQ-LNLRDLLNHRRQIPTEERPGVTLSNHNGYPDKVANEEEPRDGLCTPFADNVMA--------GARDEIKCRAFSLTLTGPASTWYRQL

Query:  KRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNEASKLK
        KR SI+SF+ L RAF+ QFVG R + RP  YLLT++Q+  ESL +Y+  FN E  +L+
Subjt:  KRQSITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNEASKLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACCAACGACCTGCGGGAGTTCCTGGAGAACCGAAGAAAAGAACATGAAAGCCGAGGACAATTGAATTTACGCGATCTCCTCAACCATCGCCGCCAAATC
CCTACTGAGGAACGTCCAGGCGTCACGTTAAGTAATCATAATGGCTACCCCGATAAGGTAGCAAATGAAGAAGAACCACGCGATGGGTTGTGCACCCCATTCGCA
GACAATGTCATGGCAGGGGCTCGTGACGAGATAAAATGCAGGGCATTTTCGTTAACTCTTACTGGTCCAGCCAGTACTTGGTATCGACAACTTAAAAGGCAGTCG
ATAACTTCCTTTCAGGAGTTAACTCGTGCTTTTCTGGCACAGTTTGTAGGGCGACGTGAGAAGAAAAGGCCAGATACCTACTTACTGACGCTTCGACAAAAAGCG
AACGAAAGCCTACGCGAATATATCGTTTGCTTTAATAACGAAGCCTCAAAGTTGAAGGAGGCACTGGCGGAACTACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACCAACGACCTGCGGGAGTTCCTGGAGAACCGAAGAAAAGAACATGAAAGCCGAGGACAATTGAATTTACGCGATCTCCTCAACCATCGCCGCCAAATC
CCTACTGAGGAACGTCCAGGCGTCACGTTAAGTAATCATAATGGCTACCCCGATAAGGTAGCAAATGAAGAAGAACCACGCGATGGGTTGTGCACCCCATTCGCA
GACAATGTCATGGCAGGGGCTCGTGACGAGATAAAATGCAGGGCATTTTCGTTAACTCTTACTGGTCCAGCCAGTACTTGGTATCGACAACTTAAAAGGCAGTCG
ATAACTTCCTTTCAGGAGTTAACTCGTGCTTTTCTGGCACAGTTTGTAGGGCGACGTGAGAAGAAAAGGCCAGATACCTACTTACTGACGCTTCGACAAAAAGCG
AACGAAAGCCTACGCGAATATATCGTTTGCTTTAATAACGAAGCCTCAAAGTTGAAGGAGGCACTGGCGGAACTACCTTGA
Protein sequenceShow/hide protein sequence
MDTNDLREFLENRRKEHESRGQLNLRDLLNHRRQIPTEERPGVTLSNHNGYPDKVANEEEPRDGLCTPFADNVMAGARDEIKCRAFSLTLTGPASTWYRQLKRQS
ITSFQELTRAFLAQFVGRREKKRPDTYLLTLRQKANESLREYIVCFNNEASKLKEALAELP