CuGenDBv2

Gene ID	Moc01g01660
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Genome location	chr1:1144828..1145307
RNA-Seq Expression	Moc01g01660
Synteny	Moc01g01660
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000953 - Chromo/chromo shadow domain IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032849.1 reverse transcriptase [Cucumis melo var. makuwa]

4.6e-58

76.47

Show/hide

Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVRK  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

KAA0046544.1 reverse transcriptase [Cucumis melo var. makuwa]

7.9e-58

75.16

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Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V+LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+L+KWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

KAA0053389.1 reverse transcriptase [Cucumis melo var. makuwa]

7.9e-58

75.82

Show/hide

Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V+LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-57

75.82

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Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

TYK19637.1 reverse transcriptase [Cucumis melo var. makuwa]

1.0e-57

75.82

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Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUK4 Reverse transcriptase

2.2e-58

76.47

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Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVRK  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

A0A5A7TU11 Reverse transcriptase

3.8e-58

75.16

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Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V+LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+L+KWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

A0A5A7UIU9 Reverse transcriptase

3.8e-58

75.82

Show/hide

Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V+LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

A0A5D3C4R1 Reverse transcriptase

5.0e-58

75.82

Show/hide

Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

A0A5D3DBE0 Reverse transcriptase

5.0e-58

75.82

Show/hide

Query:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG
        IA+AYLEKASK MKKWAD+KRRPLEFR GD+VLIKLRPEQ+RFRG KDQRLVRKYEGPVEVLKKVGN SY+V LP WMKI+ VIHVSNLKPYH D ED  
Subjt:  IAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDDG

Query:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS
         N V RP IDL+ KEDK+ EEIL ERVR+  RP RR+ E+LVKWK+LP  E S
Subjt:  CNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAGCAGACGACATGATCGCTCAAGCATATTTGGAAAAAGCTTCCAAGCATATGAAGAAATGGGCAGATCGCAAGCGTCGCCCCCTCGAATTTCGAGTGGGT
GACAAAGTCCTCATAAAGTTAAGGCCAGAACAGATTCGTTTTCGAGGGTATAAAGACCAGAGACTTGTGAGAAAGTACGAAGGACCCGTGGAAGTGTTGAAGAAA
GTGGGGAATGTCTCGTATAAGGTGATATTGCCCGCCTGGATGAAGATTCACCTAGTAATCCATGTGAGCAACTTAAAACCTTACCACCCCGACCCTGAGGATGAC
GGATGCAATGCTGTGGTGCGGCCCGCCATCGATCTGAATATGAAGGAAGACAAGGAAGCAGAGGAGATCCTTGTAGAGAGAGTCAGGAAGGTGGGAAGACCCGTC
CGCAGAGTTCAGGAATTTCTCGTCAAATGGAAGGACTTACCTGATGCAGAAATCAGCTAG

mRNA sequence

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Protein sequence

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MEADDMIAQAYLEKASKHMKKWADRKRRPLEFRVGDKVLIKLRPEQIRFRGYKDQRLVRKYEGPVEVLKKVGNVSYKVILPAWMKIHLVIHVSNLKPYHPDPEDD
GCNAVVRPAIDLNMKEDKEAEEILVERVRKVGRPVRRVQEFLVKWKDLPDAEIS

Moc01g01660 (gene) of Bitter gourd (OHB3-1) v2 genome