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Moc01g01780 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g01780
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:1198710..1200915
RNA-Seq ExpressionMoc01g01780
SyntenyMoc01g01780
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051899.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.3e-1239.5Show/hide
Query:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------
        V  +WY ++ A NH+T D  N  NP EYGGK  +TI NG KL I+ IG S L++   +L+L+N+L +P IAK+LV                         
Subjt:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------

Query:  -----VLKGVLKDDLYKLD
             +LKG+LKDDLY L+
Subjt:  -----VLKGVLKDDLYKLD
TYJ99887.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-1240.34Show/hide
Query:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------
        V  +WY ++ A NH+T D  N  NP EYGGK  +TI NG KL I+ IG S L++   +L+L+N+L +P IAKNLV                         
Subjt:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------

Query:  -----VLKGVLKDDLYKLD
             +LKG+LKDDLY L+
Subjt:  -----VLKGVLKDDLYKLD
XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]1.2e-1547.06Show/hide
Query:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
        +V P+WY+DS A+NHVT +C+N  NP EY G E +T+ NG++L IS++G +CL   +  L L+N+LC+P IAKNL+ +  + +D+
Subjt:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
XP_016902204.1 PREDICTED: uncharacterized protein LOC107991581 isoform X4 [Cucumis melo]1.4e-1146.75Show/hide
Query:  DSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
        DS A+NHVT +C+N  NP EY G E +T+ NG++L IS++G +CL   +  L L+N+LC+P IAKNL+ +  + +D+
Subjt:  DSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]6.8e-1445.83Show/hide
Query:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNL------VVLKGVLKDDLYKLD
        ++ PSWY DS A++HVT + NN     +Y G E + + NG+KL ISHIG + + +  G L L+++L +P IAKNL       +LKG LKD+LY+LD
Subjt:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNL------VVLKGVLKDDLYKLD
TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X16.0e-1647.06Show/hide
Query:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
        +V P+WY+DS A+NHVT +C+N  NP EY G E +T+ NG++L IS++G +CL   +  L L+N+LC+P IAKNL+ +  + +D+
Subjt:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
A0A1S4E1U9 uncharacterized protein LOC107991581 isoform X46.8e-1246.75Show/hide
Query:  DSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
        DS A+NHVT +C+N  NP EY G E +T+ NG++L IS++G +CL   +  L L+N+LC+P IAKNL+ +  + +D+
Subjt:  DSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDD
A0A5A7UEH3 Retrovirus-related Pol polyprotein from transposon TNT 1-944.0e-1239.5Show/hide
Query:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------
        V  +WY ++ A NH+T D  N  NP EYGGK  +TI NG KL I+ IG S L++   +L+L+N+L +P IAK+LV                         
Subjt:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------

Query:  -----VLKGVLKDDLYKLD
             +LKG+LKDDLY L+
Subjt:  -----VLKGVLKDDLYKLD
A0A5D3BL83 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1240.34Show/hide
Query:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------
        V  +WY ++ A NH+T D  N  NP EYGGK  +TI NG KL I+ IG S L++   +L+L+N+L +P IAKNLV                         
Subjt:  VGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV-------------------------

Query:  -----VLKGVLKDDLYKLD
             +LKG+LKDDLY L+
Subjt:  -----VLKGVLKDDLYKLD
A0A6J1DCW4 uncharacterized protein LOC1110195983.3e-1445.83Show/hide
Query:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNL------VVLKGVLKDDLYKLD
        ++ PSWY DS A++HVT + NN     +Y G E + + NG+KL ISHIG + + +  G L L+++L +P IAKNL       +LKG LKD+LY+LD
Subjt:  MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNL------VVLKGVLKDDLYKLD
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-0741.1Show/hide
Query:  SWYVDSDASNHVTTDCNN-TVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV
        +W +DS A++H+T+D NN +++ P  GG + M  D G  + ISH G + L +++  LNL N+L +P+I KNL+
Subjt:  SWYVDSDASNHVTTDCNN-TVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.0e-0634.72Show/hide
Query:  SWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV
        +W +DS A++H+T+D NN      Y G + + I +G  + I+H G + L + +  L+L  +L +P+I KNL+
Subjt:  SWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLV
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGGTCCAAGCTGGTACGTGGATAGCGACGCCTCAAATCATGTTACAACAGACTGCAATAATACTGTCAACCCACCTGAATATGGAGGTAAGGAAACAATG
ACTATTGATAATGGACACAAGTTGTTGATTTCTCATATTGGTAAATCGTGCTTAGTCTCTGAAAATGGACTTCTTAATCTTGAGAACATGTTGTGCATGCCTCAT
ATTGCAAAGAATCTTGTGGTGCTGAAGGGGGTCCTTAAAGATGACCTTTACAAATTGGATACAGTTGGAACAACATTCACCGGTAAAGCTTCAAATCAATTTCCA
AATGGTTTGAACATGGATAATCTTGGAGATGAAGGCAATATTTCTGATGCTCGGAAGAGAAAGGCACTACAAGGAACTGTTGAACGAATGATTCGTAGCATGGAG
GCATTGACGTGGATAGGAAGGTTGGAGACTCAAAACCATGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTGGTCCAAGCTGGTACGTGGATAGCGACGCCTCAAATCATGTTACAACAGACTGCAATAATACTGTCAACCCACCTGAATATGGAGGTAAGGAAACAATG
ACTATTGATAATGGACACAAGTTGTTGATTTCTCATATTGGTAAATCGTGCTTAGTCTCTGAAAATGGACTTCTTAATCTTGAGAACATGTTGTGCATGCCTCAT
ATTGCAAAGAATCTTGTGGTGCTGAAGGGGGTCCTTAAAGATGACCTTTACAAATTGGATACAGTTGGAACAACATTCACCGGTAAAGCTTCAAATCAATTTCCA
AATGGTTTGAACATGGATAATCTTGGAGATGAAGGCAATATTTCTGATGCTCGGAAGAGAAAGGCACTACAAGGAACTGTTGAACGAATGATTCGTAGCATGGAG
GCATTGACGTGGATAGGAAGGTTGGAGACTCAAAACCATGCTTAG
Protein sequenceShow/hide protein sequence
MVGPSWYVDSDASNHVTTDCNNTVNPPEYGGKETMTIDNGHKLLISHIGKSCLVSENGLLNLENMLCMPHIAKNLVVLKGVLKDDLYKLDTVGTTFTGKASNQFP
NGLNMDNLGDEGNISDARKRKALQGTVERMIRSMEALTWIGRLETQNHA