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Moc01g01830 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g01830
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Genome locationchr1:1239163..1240920
RNA-Seq ExpressionMoc01g01830
SyntenyMoc01g01830
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]8.9e-3193.33Show/hide
Query:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        KMAAY QNDKLLIHCFQDSLS P SRWYMQLDSS VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEKKSTESFK
Subjt:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]9.2e-4452.45Show/hide
Query:  MPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----------------------------------------------------------
        MPQ+TTYNPLYDVPVGQY HPFVKGAQQ+P N+IFREPEQMM                                                          
Subjt:  MPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----------------------------------------------------------

Query:  -----------------------------KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKST
                                     KMAAY QNDKLLIHCFQDSLSGP SRWYMQLDSS VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEKKST
Subjt:  -----------------------------KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKST

Query:  ESFK
        +SFK
Subjt:  ESFK

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.1e-4444.57Show/hide
Query:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGY-------GPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----
        D +LLALEK KT A+   +SNP HEP  TP +PPG+       GP  RP+  GFM Q+TTYNPLYD+P GQ+P P V+G  Q P  +IF+EPEQ++    
Subjt:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGY-------GPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----

Query:  -----------------------------------------------------------------------------------KMAAYFQNDKLLIHCFQ
                                                                                           KMAAY QNDKLLIHCFQ
Subjt:  -----------------------------------------------------------------------------------KMAAYFQNDKLLIHCFQ

Query:  DSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        DSLSGP S WYM LDS  V SWKNLADSFLKQYKHNIDM  DRLDLQ MEKK+ ESFK
Subjt:  DSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]3.0e-6355.38Show/hide
Query:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGYGPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM-----------
        D + L LEK K  ADPATSSNP HEPQETPPYPPGYGP LRPVA GFMPQ+TTYNPLYDVP+GQYPH FVKGAQQ+P N+IFREPEQMM           
Subjt:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGYGPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM-----------

Query:  ----------------------------------------------------------------------------KMAAYFQNDKLLIHCFQDSLSGPT
                                                                                    KM AY QN KLLIHCFQDSL G  
Subjt:  ----------------------------------------------------------------------------KMAAYFQNDKLLIHCFQDSLSGPT

Query:  SRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        SRWYMQLDSS VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEK STESFK
Subjt:  SRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.1e-3194.67Show/hide
Query:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        KMAAY QNDKLLIHCFQDSLSGP SRWYMQLDSS+VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEKKSTESFK
Subjt:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H4.3e-3193.33Show/hide
Query:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        KMAAY QNDKLLIHCFQDSLS P SRWYMQLDSS VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEKKSTESFK
Subjt:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

A0A6J1D099 Ribonuclease H4.4e-4452.45Show/hide
Query:  MPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----------------------------------------------------------
        MPQ+TTYNPLYDVPVGQY HPFVKGAQQ+P N+IFREPEQMM                                                          
Subjt:  MPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----------------------------------------------------------

Query:  -----------------------------KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKST
                                     KMAAY QNDKLLIHCFQDSLSGP SRWYMQLDSS VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEKKST
Subjt:  -----------------------------KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKST

Query:  ESFK
        +SFK
Subjt:  ESFK

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222315.3e-4544.57Show/hide
Query:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGY-------GPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----
        D +LLALEK KT A+   +SNP HEP  TP +PPG+       GP  RP+  GFM Q+TTYNPLYD+P GQ+P P V+G  Q P  +IF+EPEQ++    
Subjt:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGY-------GPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM----

Query:  -----------------------------------------------------------------------------------KMAAYFQNDKLLIHCFQ
                                                                                           KMAAY QNDKLLIHCFQ
Subjt:  -----------------------------------------------------------------------------------KMAAYFQNDKLLIHCFQ

Query:  DSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        DSLSGP S WYM LDS  V SWKNLADSFLKQYKHNIDM  DRLDLQ MEKK+ ESFK
Subjt:  DSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

A0A6J1DZ90 Ribonuclease H1.5e-6355.38Show/hide
Query:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGYGPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM-----------
        D + L LEK K  ADPATSSNP HEPQETPPYPPGYGP LRPVA GFMPQ+TTYNPLYDVP+GQYPH FVKGAQQ+P N+IFREPEQMM           
Subjt:  DGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGYGPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMM-----------

Query:  ----------------------------------------------------------------------------KMAAYFQNDKLLIHCFQDSLSGPT
                                                                                    KM AY QN KLLIHCFQDSL G  
Subjt:  ----------------------------------------------------------------------------KMAAYFQNDKLLIHCFQDSLSGPT

Query:  SRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        SRWYMQLDSS VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEK STESFK
Subjt:  SRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

A0A6J1E2J7 Ribonuclease H5.1e-3294.67Show/hide
Query:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK
        KMAAY QNDKLLIHCFQDSLSGP SRWYMQLDSS+VGSWKNLADSFLKQYKHNIDMA DRLDLQRMEKKSTESFK
Subjt:  KMAAYFQNDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCGCATGAAATTCTCCATTCAGATGGCGTCCTCCTCGCACTAGAAAAATGCAAGACGGCTGCGGATCCTGCTACATCTAGCAACCCCTTCCATGAGCCG
CAAGAAACCCCGCCTTATCCACCTGGGTATGGTCCACTTCTTAGGCCAGTAGCAGGGGGTTTCATGCCACAACATACAACGTACAACCCTCTGTATGACGTCCCG
GTTGGTCAGTATCCACATCCCTTTGTTAAAGGAGCTCAACAAATGCCAGTCAACGTCATCTTTCGAGAGCCCGAGCAAATGATGAAGATGGCAGCGTACTTCCAA
AATGACAAACTGTTGATACACTGCTTTCAAGATAGTCTATCTGGTCCAACTTCTCGTTGGTACATGCAATTAGATAGCTCTGATGTCGGTTCGTGGAAGAATCTG
GCCGACTCCTTCCTAAAGCAATATAAGCATAACATAGACATGGCTTCAGACCGCTTAGATTTGCAAAGAATGGAGAAGAAGAGTACAGAAAGCTTTAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCGCATGAAATTCTCCATTCAGATGGCGTCCTCCTCGCACTAGAAAAATGCAAGACGGCTGCGGATCCTGCTACATCTAGCAACCCCTTCCATGAGCCG
CAAGAAACCCCGCCTTATCCACCTGGGTATGGTCCACTTCTTAGGCCAGTAGCAGGGGGTTTCATGCCACAACATACAACGTACAACCCTCTGTATGACGTCCCG
GTTGGTCAGTATCCACATCCCTTTGTTAAAGGAGCTCAACAAATGCCAGTCAACGTCATCTTTCGAGAGCCCGAGCAAATGATGAAGATGGCAGCGTACTTCCAA
AATGACAAACTGTTGATACACTGCTTTCAAGATAGTCTATCTGGTCCAACTTCTCGTTGGTACATGCAATTAGATAGCTCTGATGTCGGTTCGTGGAAGAATCTG
GCCGACTCCTTCCTAAAGCAATATAAGCATAACATAGACATGGCTTCAGACCGCTTAGATTTGCAAAGAATGGAGAAGAAGAGTACAGAAAGCTTTAAGTAA
Protein sequenceShow/hide protein sequence
MQAHEILHSDGVLLALEKCKTAADPATSSNPFHEPQETPPYPPGYGPLLRPVAGGFMPQHTTYNPLYDVPVGQYPHPFVKGAQQMPVNVIFREPEQMMKMAAYFQ
NDKLLIHCFQDSLSGPTSRWYMQLDSSDVGSWKNLADSFLKQYKHNIDMASDRLDLQRMEKKSTESFK