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Moc01g02000 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g02000
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 48 kDa protein
Genome locationchr1:1344243..1349089
RNA-Seq ExpressionMoc01g02000
SyntenyMoc01g02000
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB1327468.1 unnamed protein product, partial [Coregonus sp. 'balchen']6.2e-0430.07Show/hide
Query:  LDLDRVRFNRMRKCNGPGFNTGFDLDLDRVQFNQMIKCNGPGFN-------NRLR-PRLRSGFDLDLNRVRFNPMRKCNGPSFNTGFDLDLDRVRFNRRY
        L+L+RVR+  + +      N G  L+L+RV++ ++ +   P  N       NR R   L  G  L+LNRV++  +        N    L+L+RVR+    
Subjt:  LDLDRVRFNRMRKCNGPGFNTGFDLDLDRVQFNQMIKCNGPGFN-------NRLR-PRLRSGFDLDLNRVRFNPMRKCNGPSFNTGFDLDLDRVRFNRRY

Query:  NAMDLALTTGFDLDLDRVRFNRMRKCNGLGFNTGFDLDLDRVR
            L L  G  L+L+RVR+  + +   L  N    L+L+RV+
Subjt:  NAMDLALTTGFDLDLDRVRFNRMRKCNGLGFNTGFDLDLDRVR

XP_022144020.1 (-)-germacrene D synthase-like [Momordica charantia]8.7e-0646.84Show/hide
Query:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYDC
        ELALYA VKY+SQLNDLQLLHG H+                         E  V+    RILG +E++L LV SDYYDC
Subjt:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYDC

XP_022151686.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Momordica charantia]3.1e-1970.51Show/hide
Query:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYD
        ELA+YA VKY+SQLNDLQLL G H+GLAGRTT DKV A+ L+V EL+D  EII IT + RILG D ++LALVASDYYD
Subjt:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYD

TrEMBL top hitse value%identityAlignment
A0A6F9AUD5 Uncharacterized protein (Fragment)3.0e-0430.07Show/hide
Query:  LDLDRVRFNRMRKCNGPGFNTGFDLDLDRVQFNQMIKCNGPGFN-------NRLR-PRLRSGFDLDLNRVRFNPMRKCNGPSFNTGFDLDLDRVRFNRRY
        L+L+RVR+  + +      N G  L+L+RV++ ++ +   P  N       NR R   L  G  L+LNRV++  +        N    L+L+RVR+    
Subjt:  LDLDRVRFNRMRKCNGPGFNTGFDLDLDRVQFNQMIKCNGPGFN-------NRLR-PRLRSGFDLDLNRVRFNPMRKCNGPSFNTGFDLDLDRVRFNRRY

Query:  NAMDLALTTGFDLDLDRVRFNRMRKCNGLGFNTGFDLDLDRVR
            L L  G  L+L+RVR+  + +   L  N    L+L+RV+
Subjt:  NAMDLALTTGFDLDLDRVRFNRMRKCNGLGFNTGFDLDLDRVR

A0A6J1CQG9 (-)-germacrene D synthase-like4.2e-0646.84Show/hide
Query:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYDC
        ELALYA VKY+SQLNDLQLLHG H+                         E  V+    RILG +E++L LV SDYYDC
Subjt:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYDC

A0A6J1DFF2 U11/U12 small nuclear ribonucleoprotein 48 kDa protein1.5e-1970.51Show/hide
Query:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYD
        ELA+YA VKY+SQLNDLQLL G H+GLAGRTT DKV A+ L+V EL+D  EII IT + RILG D ++LALVASDYYD
Subjt:  ELALYASVKYNSQLNDLQLLHGKHNGLAGRTTLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCGGCTTTAACAACAGGCTTCAACCTCGACTTGGATCGGGTTCGATTTAACCGAATGAGAAAATGCAACGGACCTGGCTTCAACACAGGCTTCGACCTC
GACTTGGATCGGGTTCAATTTAACCAAATGATAAAATGCAACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTAGATCGGGCTTCGACCTCGACTTGAAT
CGGGTTCGATTTAACCCAATGAGAAAATGCAACGGACCTAGCTTCAACACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAAGATATAATGCAATG
GACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGAGAAAATGCAACGGACTTGGCTTCAACACAGGTTTCGACCTCGAC
TTGGATCGGGTGAGGCGCCGATCGGTCCTAGAAATGACTGCACAATGTGAGGAGTTAACAATTGGAATGCCCAAAGATCATGGGATAAGAATGGCAGCGGTGGAA
AGTTGTACTCATGAACTTGCACTTTATGCTTCAGTGAAGTACAATTCTCAGTTGAATGACCTACAACTCCTGCATGGTAAACACAACGGACTTGCGGGTCGTACC
ACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACCGGAGCTAGTAGATGACTTTGAAATAATTGTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAA
AACACTCTTGCTTTAGTTGCCTCCGACTATTATGATTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACCCGGCTTTAACAACAGGCTTCAACCTCGACTTGGATCGGGTTCGATTTAACCGAATGAGAAAATGCAACGGACCTGGCTTCAACACAGGCTTCGACCTC
GACTTGGATCGGGTTCAATTTAACCAAATGATAAAATGCAACGGACCTGGCTTTAACAACAGGCTTCGACCTCGACTTAGATCGGGCTTCGACCTCGACTTGAAT
CGGGTTCGATTTAACCCAATGAGAAAATGCAACGGACCTAGCTTCAACACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAAGATATAATGCAATG
GACCTGGCTTTAACAACAGGCTTCGACCTCGACTTGGATCGGGTTCGATTTAACCGAATGAGAAAATGCAACGGACTTGGCTTCAACACAGGTTTCGACCTCGAC
TTGGATCGGGTGAGGCGCCGATCGGTCCTAGAAATGACTGCACAATGTGAGGAGTTAACAATTGGAATGCCCAAAGATCATGGGATAAGAATGGCAGCGGTGGAA
AGTTGTACTCATGAACTTGCACTTTATGCTTCAGTGAAGTACAATTCTCAGTTGAATGACCTACAACTCCTGCATGGTAAACACAACGGACTTGCGGGTCGTACC
ACTTTGGATAAGGTGGCTGCAATGGTTCTACAGGTACCGGAGCTAGTAGATGACTTTGAAATAATTGTGATAACAGCTCGGTATAGGATATTGGGATTGGATGAA
AACACTCTTGCTTTAGTTGCCTCCGACTATTATGATTGTTAG
Protein sequenceShow/hide protein sequence
MDPALTTGFNLDLDRVRFNRMRKCNGPGFNTGFDLDLDRVQFNQMIKCNGPGFNNRLRPRLRSGFDLDLNRVRFNPMRKCNGPSFNTGFDLDLDRVRFNRRYNAM
DLALTTGFDLDLDRVRFNRMRKCNGLGFNTGFDLDLDRVRRRSVLEMTAQCEELTIGMPKDHGIRMAAVESCTHELALYASVKYNSQLNDLQLLHGKHNGLAGRT
TLDKVAAMVLQVPELVDDFEIIVITARYRILGLDENTLALVASDYYDC