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Moc01g03540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g03540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111024115
Genome locationchr1:2275974..2278477
RNA-Seq ExpressionMoc01g03540
SyntenyMoc01g03540
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]8.6e-3470.69Show/hide
Query:  DNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPP---CVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHN
        +  I DARRREALEGT+ER+I  MEALT+RIGRLE QNQA  R+PPP    V+DED+YEGD S+HWEDDQ TVLA PR G+ HVG GLDRGRGRGRGYHN
Subjt:  DNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPP---CVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHN

Query:  LQRRAPREDAQEARTL
         Q RAPR +AQ  R L
Subjt:  LQRRAPREDAQEARTL

XP_023520282.1 uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo]1.1e-1756.25Show/hide
Query:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG
        M NP+DNT I DAR REA + TMERLI G+E LT RIGRLE QNQA +RIP P     D YEGD S+H ED+              VG GL RGR  GR 
Subjt:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG

Query:  YHNLQRRAPRED
        YHNLQ+R P +D
Subjt:  YHNLQRRAPRED

XP_023520835.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo]1.1e-1756.25Show/hide
Query:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG
        M NP+DNT I DAR REA + TMERLI G+E LT RIGRLE QNQA +RIP P     D YEGD S+H ED+              VG GL RGR  GR 
Subjt:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG

Query:  YHNLQRRAPRED
        YHNLQ+R P +D
Subjt:  YHNLQRRAPRED

XP_023541047.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111801285 [Cucurbita pepo subsp. pepo]1.4e-1553.57Show/hide
Query:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG
        M NP+DNT I DAR REA + TMERLI G+E LT RIGRLE QNQA +R P P     + YEGD  +H ED+              VG GL RGR  GR 
Subjt:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG

Query:  YHNLQRRAPRED
        YHNLQ+R P +D
Subjt:  YHNLQRRAPRED

XP_023553652.1 uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]5.6e-1755.36Show/hide
Query:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG
        M NP+DNT I DAR REA + TM+RLI G+E LT RIGRLE QNQA +RIP P     D YEGD S+H ED+              VG GL RGR  GR 
Subjt:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRG

Query:  YHNLQRRAPRED
        YHNLQ+R P +D
Subjt:  YHNLQRRAPRED

TrEMBL top hitse value%identityAlignment
A0A5A7TK52 Retrotrans_gag domain-containing protein4.1e-1338.37Show/hide
Query:  MSNPEDNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVV------DEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGR
        M N  D    + + REA +G + R+I  MEALT R+ R E +N+A ER+PPP         +++  EGD S+  +DDQVT+L  PRR    VG G+ R R
Subjt:  MSNPEDNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVV------DEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGR

Query:  GRGRGYHNLQRRAPREDAQ----------EARTLIEKIEPKNASKVHHGSQHVVYKAKASRDKQKSKF-VSK
        GRGR Y N+QRRA +E +Q          +      K +PK   K     ++ V+      D+QK +F VSK
Subjt:  GRGRGYHNLQRRAPREDAQ----------EARTLIEKIEPKNASKVHHGSQHVVYKAKASRDKQKSKF-VSK

A0A5A7TYI0 Uncharacterized protein7.2e-1045.83Show/hide
Query:  MEALTKRIGRLEAQNQASERIPPPCVV------DEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHNLQRRAPREDAQEARTL
        MEALT R+ RLE +N+A ER+PPP         + + YEGD  +  +DDQVT+L  PRR    VG G+ R RG G+ Y N+QRR  +E  Q  R +
Subjt:  MEALTKRIGRLEAQNQASERIPPPCVV------DEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHNLQRRAPREDAQEARTL

A0A5D3CHG3 Retrotrans_gag domain-containing protein4.2e-1039.19Show/hide
Query:  LICGMEALTKRIGRLEAQNQASERIPPPCVV------DEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHNLQRRAPREDAQ-----
        +I  MEALT R+ R E +N+A ER+PPP         +++  EGD S+  +DDQVT+L  PRR    VG G+ R RGRGR Y N+QRRA +E +Q     
Subjt:  LICGMEALTKRIGRLEAQNQASERIPPPCVV------DEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHNLQRRAPREDAQ-----

Query:  -----EARTLIEKIEPKNASKVHHGSQHVVYKAKASRDKQKSKF-VSK
             +      K +PK   K     ++ V+      D+QK +F VSK
Subjt:  -----EARTLIEKIEPKNASKVHHGSQHVVYKAKASRDKQKSKF-VSK

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241154.2e-3470.69Show/hide
Query:  DNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPP---CVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHN
        +  I DARRREALEGT+ER+I  MEALT+RIGRLE QNQA  R+PPP    V+DED+YEGD S+HWEDDQ TVLA PR G+ HVG GLDRGRGRGRGYHN
Subjt:  DNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPP---CVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHN

Query:  LQRRAPREDAQEARTL
         Q RAPR +AQ  R L
Subjt:  LQRRAPREDAQEARTL

A0A6J1I7T3 LOW QUALITY PROTEIN: uncharacterized protein LOC1114699481.5e-1260.24Show/hide
Query:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDD-QVTVLAAPRR
        M NP++NT I DAR REA + TMERLI G+E LT RIGRLE QNQA +RIP P     D YEGD S+H ED+ QV  L + RR
Subjt:  MSNPEDNT-ILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDD-QVTVLAAPRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAGAGCCGTCATGCCTCGAGAAGTTAAGCGGGGAGTAACACAGTGGGGTGTAGAGGAAGGGTCGACCGCGGTGATGACGTGGAGAGGGCTTGACCGAGGAAGGAT
CACTAGCTTAGTTAGTGAGGATAGAGGGAAGGGTCGTTGGGTACGAGTAGCATTGAGATTTATGTTATTGCTAGGTGTCAACCGCGGAGGAAATTTTGTATTCTTTAGAA
CTACTTTATTTGTTATGGATGTTGCTGAACGTATGGGAGTCAAAGCTTTATTTCGTTTAAATTATTTTCCCAGGGAGTTGCTTATCGCGTGTTTAGAGTTAAGGCTAGCC
AGCATGTCCAATCCTGAAGATAATACTATTCTCGATGCCCGAAGGAGAGAGGCACTAGAAGGAACTATGGAACGATTGATTTGTGGCATGGAGGCTTTAACAAAACGGAT
AGGAAGGTTGGAGGCTCAAAACCAAGCTTCGGAGAGAATTCCACCACCATGTGTTGTAGATGAGGATGATTATGAAGGTGATAGATCTAATCATTGGGAGGACGATCAAG
TTACAGTCTTGGCGGCTCCAAGACGGGGAGAGAGACATGTTGGTCGTGGCTTAGATCGAGGGCGAGGCCGAGGAAGAGGCTACCATAATCTCCAACGGAGAGCTCCACGG
GAGGATGCTCAAGAGGCTAGAACACTCATTGAGAAGATTGAACCAAAGAATGCTTCCAAAGTACACCATGGCAGTCAACATGTGGTTTACAAGGCTAAAGCATCTCGTGA
TAAGCAAAAGTCCAAATTTGTTTCTAAATTCAATCATGGCAAGAAGCATACAATGTTCAAACCGACTGATTGGGTTTGGAGATCCTATTGGAAGGATCGATTTTCTGATG
GAAAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAGAGCCGTCATGCCTCGAGAAGTTAAGCGGGGAGTAACACAGTGGGGTGTAGAGGAAGGGTCGACCGCGGTGATGACGTGGAGAGGGCTTGACCGAGGAAGGAT
CACTAGCTTAGTTAGTGAGGATAGAGGGAAGGGTCGTTGGGTACGAGTAGCATTGAGATTTATGTTATTGCTAGGTGTCAACCGCGGAGGAAATTTTGTATTCTTTAGAA
CTACTTTATTTGTTATGGATGTTGCTGAACGTATGGGAGTCAAAGCTTTATTTCGTTTAAATTATTTTCCCAGGGAGTTGCTTATCGCGTGTTTAGAGTTAAGGCTAGCC
AGCATGTCCAATCCTGAAGATAATACTATTCTCGATGCCCGAAGGAGAGAGGCACTAGAAGGAACTATGGAACGATTGATTTGTGGCATGGAGGCTTTAACAAAACGGAT
AGGAAGGTTGGAGGCTCAAAACCAAGCTTCGGAGAGAATTCCACCACCATGTGTTGTAGATGAGGATGATTATGAAGGTGATAGATCTAATCATTGGGAGGACGATCAAG
TTACAGTCTTGGCGGCTCCAAGACGGGGAGAGAGACATGTTGGTCGTGGCTTAGATCGAGGGCGAGGCCGAGGAAGAGGCTACCATAATCTCCAACGGAGAGCTCCACGG
GAGGATGCTCAAGAGGCTAGAACACTCATTGAGAAGATTGAACCAAAGAATGCTTCCAAAGTACACCATGGCAGTCAACATGTGGTTTACAAGGCTAAAGCATCTCGTGA
TAAGCAAAAGTCCAAATTTGTTTCTAAATTCAATCATGGCAAGAAGCATACAATGTTCAAACCGACTGATTGGGTTTGGAGATCCTATTGGAAGGATCGATTTTCTGATG
GAAAGAAGTGA
Protein sequenceShow/hide protein sequence
MSRAVMPREVKRGVTQWGVEEGSTAVMTWRGLDRGRITSLVSEDRGKGRWVRVALRFMLLLGVNRGGNFVFFRTTLFVMDVAERMGVKALFRLNYFPRELLIACLELRLA
SMSNPEDNTILDARRREALEGTMERLICGMEALTKRIGRLEAQNQASERIPPPCVVDEDDYEGDRSNHWEDDQVTVLAAPRRGERHVGRGLDRGRGRGRGYHNLQRRAPR
EDAQEARTLIEKIEPKNASKVHHGSQHVVYKAKASRDKQKSKFVSKFNHGKKHTMFKPTDWVWRSYWKDRFSDGKK