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Moc01g03650 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g03650
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Genome locationchr1:2353731..2354314
RNA-Seq ExpressionMoc01g03650
SyntenyMoc01g03650
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]4.8e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein2.3e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

A0A5A7TU93 Gag/pol protein2.3e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

A0A5A7TWB9 Gag/pol protein2.3e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

A0A5A7TZD7 Gag/pol protein2.3e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

A0A5A7V4M1 Gag/pol protein2.3e-4558.46Show/hide
Query:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK
        MVHFN+A+ NGAVIDE S+V+FILESLP++FL F SN VMNK+ YT+TTLLNELQT++SLMK KG++GEANVATS ++FHRGS+SGTK  P SS +K +K
Subjt:  MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATS-KRFHRGSSSGTKFAPYSSESKTFK

Query:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS
        KKK  G +    + A A   +KAK A KG CF+CN  GHWK NC KYLA+KKKA +                        GATNHV SSFQGISS
Subjt:  KKKAVGKESKPDSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANE------------------------GATNHVGSSFQGISS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCACTTCAACATGGCAAAGTCAAACGGGGCCGTTATAGACGAGCAAAGTGAGGTCAACTTCATTCTAGAATCTCTTCCGAAGACTTTCCTGCCATTTTGCAGCAA
TGAGGTTATGAATAAACTGGAGTACACTATTACCACGCTCTTAAACGAGCTGCAGACCTACCAATCTCTTATGAAAAGTAAGGGACGAGAAGGGGAGGCAAACGTTGCCA
CCTCAAAGAGGTTCCACCGAGGTTCCTCCTCTGGAACCAAGTTTGCGCCGTATTCTTCTGAAAGTAAGACTTTCAAGAAGAAGAAGGCTGTTGGTAAGGAGTCTAAACCT
GACTCCACTGCTGTCGCTGCCAAGAAAAGAAAGGCCAAAGTTGCAGATAAAGGAAAATGTTTCAACTGCAACATGAACGGGCATTGGAAGCACAATTGCTCGAAATACCT
GGCCGATAAGAAGAAAGCCAACGAAGGAGCCACTAACCATGTTGGTTCTTCATTTCAGGGAATTAGTTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGCACTTCAACATGGCAAAGTCAAACGGGGCCGTTATAGACGAGCAAAGTGAGGTCAACTTCATTCTAGAATCTCTTCCGAAGACTTTCCTGCCATTTTGCAGCAA
TGAGGTTATGAATAAACTGGAGTACACTATTACCACGCTCTTAAACGAGCTGCAGACCTACCAATCTCTTATGAAAAGTAAGGGACGAGAAGGGGAGGCAAACGTTGCCA
CCTCAAAGAGGTTCCACCGAGGTTCCTCCTCTGGAACCAAGTTTGCGCCGTATTCTTCTGAAAGTAAGACTTTCAAGAAGAAGAAGGCTGTTGGTAAGGAGTCTAAACCT
GACTCCACTGCTGTCGCTGCCAAGAAAAGAAAGGCCAAAGTTGCAGATAAAGGAAAATGTTTCAACTGCAACATGAACGGGCATTGGAAGCACAATTGCTCGAAATACCT
GGCCGATAAGAAGAAAGCCAACGAAGGAGCCACTAACCATGTTGGTTCTTCATTTCAGGGAATTAGTTCCTAG
Protein sequenceShow/hide protein sequence
MVHFNMAKSNGAVIDEQSEVNFILESLPKTFLPFCSNEVMNKLEYTITTLLNELQTYQSLMKSKGREGEANVATSKRFHRGSSSGTKFAPYSSESKTFKKKKAVGKESKP
DSTAVAAKKRKAKVADKGKCFNCNMNGHWKHNCSKYLADKKKANEGATNHVGSSFQGISS