CuGenDBv2

Gene ID	Moc01g04290
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr1:2787281..2796695
RNA-Seq Expression	Moc01g04290
Synteny	Moc01g04290
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADJ18449.1 gag/pol protein, partial [Bryonia dioica]

1.7e-84

53.89

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MN+SIVQLLASEKLNG NYS WK+NLNTILVVDDLRFVLTEECPQ PA+NANR VREA+DRWVKANDKARVYILASMTDVLAKKH+ + TAK IMDSL+ 
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEA------------------------------------------------
        MFG+ S +LRHEA+K++Y + MKEGTSVREHVLD+M+HFN AEVNG  IDEA                                                
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEA------------------------------------------------

Query:  ---------------------------------------------------------------------------AEKATTGKYDLLVVETCLVEYDTST
                                                                                   AEKAT GKYDLLVVETCLVE D ST
Subjt:  ---------------------------------------------------------------------------AEKATTGKYDLLVVETCLVEYDTST

Query:  WILDSGATNHICFSFQETSSWKKLEEGEIILKVGTGDVVSAKAVGDL
        WILDSGATNHICFSFQETSSWKKL+EGEI LKVGTG+VVSA+AVGDL
Subjt:  WILDSGATNHICFSFQETSSWKKLEEGEIILKVGTGDVVSAKAVGDL

XP_022143540.1 uncharacterized protein LOC111013417 [Momordica charantia]

2.3e-78

96.86

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQL ASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPA NANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGE SSTLRHEALKYVYNEHMKEGTSVREHVLD+MVHFNTAEVN ATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

XP_022157095.1 uncharacterized protein LOC111023904 [Momordica charantia]

1.1e-80

99.37

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTA VNGATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

XP_022157632.1 uncharacterized protein LOC111024294 [Momordica charantia]

4.7e-79

97.48

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDL+FVLTEECPQTPA NANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGE SSTLRHEALKYVYNEHMKEGTSVREHVLD+MVHFNTAEVNGATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

XP_022157844.1 uncharacterized protein LOC111024457 [Momordica charantia]

9.5e-80

98.11

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPA NANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGE SSTLRHEALKYVYNEHMKEGTSVREHVLD+MVHFNTAEVNGATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CP29 uncharacterized protein LOC111013417

1.1e-78

96.86

Show/hide

Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQL ASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPA NANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGE SSTLRHEALKYVYNEHMKEGTSVREHVLD+MVHFNTAEVN ATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

A0A6J1DS54 uncharacterized protein LOC111023904

5.4e-81

99.37

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTA VNGATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

A0A6J1DUZ9 uncharacterized protein LOC111024294

2.3e-79

97.48

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDL+FVLTEECPQTPA NANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGE SSTLRHEALKYVYNEHMKEGTSVREHVLD+MVHFNTAEVNGATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

A0A6J1DXQ5 uncharacterized protein LOC111024457

4.6e-80

98.11

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPA NANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG
        MFGE SSTLRHEALKYVYNEHMKEGTSVREHVLD+MVHFNTAEVNGATIDEAAEKATTG
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEAAEKATTG

E2GK51 Gag/pol protein (Fragment)

8.1e-85

53.89

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Query:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA
        MN+SIVQLLASEKLNG NYS WK+NLNTILVVDDLRFVLTEECPQ PA+NANR VREA+DRWVKANDKARVYILASMTDVLAKKH+ + TAK IMDSL+ 
Subjt:  MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKA

Query:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEA------------------------------------------------
        MFG+ S +LRHEA+K++Y + MKEGTSVREHVLD+M+HFN AEVNG  IDEA                                                
Subjt:  MFGELSSTLRHEALKYVYNEHMKEGTSVREHVLDVMVHFNTAEVNGATIDEA------------------------------------------------

Query:  ---------------------------------------------------------------------------AEKATTGKYDLLVVETCLVEYDTST
                                                                                   AEKAT GKYDLLVVETCLVE D ST
Subjt:  ---------------------------------------------------------------------------AEKATTGKYDLLVVETCLVEYDTST

Query:  WILDSGATNHICFSFQETSSWKKLEEGEIILKVGTGDVVSAKAVGDL
        WILDSGATNHICFSFQETSSWKKL+EGEI LKVGTG+VVSA+AVGDL
Subjt:  WILDSGATNHICFSFQETSSWKKLEEGEIILKVGTGDVVSAKAVGDL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

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ATGGATGCGGCCCACTTTGTAGCTAGTAGAAACGATGTGATCCTAATTCGTTCACGTGAAGACATGCGAGTGGGGGTGTCCTGTGCAAAGAGGATTATCCTTAGATCTGC
ATGGGTGAGAGCAGCTCAACAGTGCTGGCTCAATAAGCCTCCCATTTCAGGGCGTGAGATCCATGCTTGCCTTCGTGCCGCCCTGGGAGCGGCCTCCCTTCGGAGAGTGT
TTGCATGGGTTATGAACAGGGTGAATAGGGGAAGTAGTTCATACATGAATAGCTCAATAGTTCAACTCTTAGCTTCGGAAAAACTAAACGGGGTCAATTATTCAACGTGG
AAAAACAATCTCAATACGATACTAGTCGTCGATGACCTACGATTCGTCTTAACTGAGGAATGTCCACAAACCCCTGCCGTAAATGCCAACCGAAATGTTCGGGAAGCATT
TGATCGATGGGTCAAGGCCAACGATAAGGCCCGTGTCTACATTCTTGCCAGCATGACTGATGTATTGGCAAAGAAACATGAACCCTTGATGACTGCAAAGGAAATCATGG
ATTCATTAAAGGCGATGTTTGGGGAACTTTCATCGACCTTGAGGCACGAGGCACTTAAATATGTTTACAATGAGCATATGAAGGAGGGGACCTCTGTTAGAGAACATGTC
CTGGACGTGATGGTCCACTTCAATACTGCTGAAGTGAACGGGGCCACCATTGATGAAGCAGCAGAGAAAGCAACGACAGGTAAATACGATTTACTAGTTGTTGAAACATG
TTTAGTGGAGTATGATACTTCCACCTGGATACTTGATTCAGGAGCCACTAACCATATTTGTTTCTCATTTCAGGAAACTAGTTCCTGGAAGAAGCTGGAAGAAGGCGAGA
TAATTCTCAAAGTTGGAACTGGAGATGTTGTCTCAGCCAAAGCAGTGGGAGATTTAAAATCTGCATGGGTGAGAGCAGCTCAACAGCGCTGGCTCAATAAGCCTCCCATT
TCAGGGGTGAAGGACTCGTGGGTGACCGCGGTGATGGGACGGAGGAGGCCTGACGTTCGAGGACCATAG

mRNA sequence

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Protein sequence

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MDAAHFVASRNDVILIRSREDMRVGVSCAKRIILRSAWVRAAQQCWLNKPPISGREIHACLRAALGAASLRRVFAWVMNRVNRGSSSYMNSSIVQLLASEKLNGVNYSTW
KNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGELSSTLRHEALKYVYNEHMKEGTSVREHV
LDVMVHFNTAEVNGATIDEAAEKATTGKYDLLVVETCLVEYDTSTWILDSGATNHICFSFQETSSWKKLEEGEIILKVGTGDVVSAKAVGDLKSAWVRAAQQRWLNKPPI
SGVKDSWVTAVMGRRRPDVRGP

Moc01g04290 (gene) of Bitter gourd (OHB3-1) v2 genome