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Moc01g04530 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g04530
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:2980272..2986839
RNA-Seq ExpressionMoc01g04530
SyntenyMoc01g04530
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]5.8e-1847.37Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T+G+LW K +S Y K  +SNKI+IK K F +KM+ SK +++ LDEF +II ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD L   +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-1645.26Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T G+LW K +S Y    + NKI+IK K F +KM+ SK +++ LDEF +I+ ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD LT  +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
TYK05711.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-1644.21Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T+G+LW K +S Y    + NK+++K K F +KM  SK +++ LDEF +II  + NIGE +++EN V++L NS P+ Y +VK+A+ YG+D LT  +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
TYK10340.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.5e-1847.37Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T+G+LW K +S Y K  +SNKI+IK K F +KM+ SK +++ LDEF +II ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD L   +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]8.3e-1745.26Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T G+LW K +S Y    + NKI+IK K F +KM+ SK +++ LDEF +I+ ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD LT  +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
TrEMBL top hitse value%identityAlignment
A0A5A7U459 Putative polyprotein2.8e-1847.37Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T+G+LW K +S Y K  +SNKI+IK K F +KM+ SK +++ LDEF +II ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD L   +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
A0A5A7UB25 Putative gag-pol polyprotein5.3e-1745.26Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T G+LW K +S Y    + NKI+IK K F +KM+ SK +++ LDEF +I+ ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD LT  +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
A0A5D3C1A2 Retrovirus-related Pol polyprotein from transposon TNT 1-949.0e-1744.21Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T+G+LW K +S Y    + NK+++K K F +KM  SK +++ LDEF +II  + NIGE +++EN V++L NS P+ Y +VK+A+ YG+D LT  +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
A0A5D3CG50 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-1847.37Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T+G+LW K +S Y K  +SNKI+IK K F +KM+ SK +++ LDEF +II ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD L   +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
A0A5D3DNU1 Putative gag-pol polyprotein4.0e-1745.26Show/hide
Query:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
        T G+LW K +S Y    + NKI+IK K F +KM+ SK +++ LDEF +I+ ++ NIGE +++EN  ++L NS P+ Y +VK+A+ YGRD LT  +
Subjt:  TVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRV
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.8e-0725.56Show/hide
Query:  KDTVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGR
        +DT   +W++ +S Y    ++NK+++K ++++  M+        L+ F  +I ++ N+G  +  E+  ILL NS P +Y+++ + + +G+
Subjt:  KDTVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGR
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAGCAAAGATACTGTTGGTAAGCTTTGGAGTAAGTTTCAATCAACTTATCAAAAGGCATTGGTATCTAACAAGATCTTCATCAAAACCAAAATCTTTAGCTTTAA
AATGAATTCTAGTAAACGAGTGAAAGATATTTTAGATGAATTCTACAGAATTATTCCTGAAATGAAGAATATAGGTGAAACTTTGACCAATGAGAATCATGTTATTCTTC
TTTTTAATTCTCCACCTGATGCGTATAATGATGTGAAATCTGCTATGCATTATGGTAGGGATGAGTTAACTACTCGTGTTGCTTGCCTGTTTTCTGTTTTAACCTTGCTG
GACCTGTACGCATGCCTTTTTCAACACCTCGGGACTCTTTTCCCTGGTTTCACTGATTGGCTTTTAGGTTATCGACCTGCTTCTAGTTATAAGGCTTTCTCTTTCCTCAT
TCCCCAACCTGGTTCCGATGTTGACCCGTCGATCTCCGACTGTCAGAGGGACATATTTTACCTCCTCAGCCGGTTCTCCCCTGTCAAGGGTGGTCGAATTAAGTCGATGA
CCAGGGCTCGACCTTACCTCACCCGAGAGGTCGGTCGCTTCATTCAGGCTTGTCACTCGTTCTCCCCTGTCAAGGGTGGTAAGATTAAGTCGATGACCAGGGCTCGGTCT
TGCCTCACCCGAGAGGTTTGTCGCTTTATTCAAGCCCGATGCTGGTTCTCCCCTGTCAAGGGATTCATGTTGCTTTCGGATCAAGTCGATGATCAGGGCTTGGTCCTACC
TCACCTGAATGGTCGCTCGCTTCACTCTACATGCCTCGGATCGAAATTTCGTTCGGATCGGGATTTCGCCTCGGATCGGGATTGCCCTTCGACGAAGCTTGCTTTACTGT
ATCGCTCCCCACAGATGGCGCCAATTGTTGCTGCGTGGATTTTGACTCTCCAGCTCTTCTTCTCACACACACCTAACTCAATGATAAGGGAACCGATACCTTCAAAATCA
AACCGATCTAAACCGGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAGCAAAGATACTGTTGGTAAGCTTTGGAGTAAGTTTCAATCAACTTATCAAAAGGCATTGGTATCTAACAAGATCTTCATCAAAACCAAAATCTTTAGCTTTAA
AATGAATTCTAGTAAACGAGTGAAAGATATTTTAGATGAATTCTACAGAATTATTCCTGAAATGAAGAATATAGGTGAAACTTTGACCAATGAGAATCATGTTATTCTTC
TTTTTAATTCTCCACCTGATGCGTATAATGATGTGAAATCTGCTATGCATTATGGTAGGGATGAGTTAACTACTCGTGTTGCTTGCCTGTTTTCTGTTTTAACCTTGCTG
GACCTGTACGCATGCCTTTTTCAACACCTCGGGACTCTTTTCCCTGGTTTCACTGATTGGCTTTTAGGTTATCGACCTGCTTCTAGTTATAAGGCTTTCTCTTTCCTCAT
TCCCCAACCTGGTTCCGATGTTGACCCGTCGATCTCCGACTGTCAGAGGGACATATTTTACCTCCTCAGCCGGTTCTCCCCTGTCAAGGGTGGTCGAATTAAGTCGATGA
CCAGGGCTCGACCTTACCTCACCCGAGAGGTCGGTCGCTTCATTCAGGCTTGTCACTCGTTCTCCCCTGTCAAGGGTGGTAAGATTAAGTCGATGACCAGGGCTCGGTCT
TGCCTCACCCGAGAGGTTTGTCGCTTTATTCAAGCCCGATGCTGGTTCTCCCCTGTCAAGGGATTCATGTTGCTTTCGGATCAAGTCGATGATCAGGGCTTGGTCCTACC
TCACCTGAATGGTCGCTCGCTTCACTCTACATGCCTCGGATCGAAATTTCGTTCGGATCGGGATTTCGCCTCGGATCGGGATTGCCCTTCGACGAAGCTTGCTTTACTGT
ATCGCTCCCCACAGATGGCGCCAATTGTTGCTGCGTGGATTTTGACTCTCCAGCTCTTCTTCTCACACACACCTAACTCAATGATAAGGGAACCGATACCTTCAAAATCA
AACCGATCTAAACCGGTGTGA
Protein sequenceShow/hide protein sequence
MRSKDTVGKLWSKFQSTYQKALVSNKIFIKTKIFSFKMNSSKRVKDILDEFYRIIPEMKNIGETLTNENHVILLFNSPPDAYNDVKSAMHYGRDELTTRVACLFSVLTLL
DLYACLFQHLGTLFPGFTDWLLGYRPASSYKAFSFLIPQPGSDVDPSISDCQRDIFYLLSRFSPVKGGRIKSMTRARPYLTREVGRFIQACHSFSPVKGGKIKSMTRARS
CLTREVCRFIQARCWFSPVKGFMLLSDQVDDQGLVLPHLNGRSLHSTCLGSKFRSDRDFASDRDCPSTKLALLYRSPQMAPIVAAWILTLQLFFSHTPNSMIREPIPSKS
NRSKPV