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Moc01g04540 (gene) of Bitter gourd (OHB3-1) v2 genome

Gene IDMoc01g04540
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:2988447..2991593
RNA-Seq ExpressionMoc01g04540
SyntenyMoc01g04540
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KYP35727.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]9.5e-3455.03Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A+PY+P+E KL+SRT+SCYFV Y ERSRG+KFYNPT+ +FFE GNA+ LE++EF +    ++VVFEEE VI  + V+   TI     +  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

KYP39716.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]9.5e-3455.03Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A+PY+P+E KL+SRT+SCYFV Y ERSRG+KFYNPT+ +FFE GNA+ LE++EF +    ++VVFEEE VI  + V+   TI     +  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

KYP40661.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]2.8e-3354.36Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A+PY+P+E KL+SRT+SCYFV Y +RSRG+KFYNPT+ +FFE GNA+ LE++EF +    ++VVFEEE VI  + V+   TI     +  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

KYP52774.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan]1.4e-3254.36Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A PY+P+E KL+SRT+SCYFV Y ERSRG+KFYNPT+ +FFE GNA+ L ++EF +    ++VVFEEE VI  + V    TI    ++  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

RDX93178.1 hypothetical protein CR513_24598, partial [Mucuna pruriens]4.7e-3354.25Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDV--VTLPTIVSKV--VLDNDTQDEV
        A+PY+P+E+KLDSRT+SCYFV YAERSRG+KFY+PTS +FFE GNA++LE +EF +    ++VVFEEE++   ND+  V +P  V +   V+ ++ Q  +
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDV--VTLPTIVSKV--VLDNDTQDEV

Query:  PTLDVITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
           D++  QD  +     PI+QPQ  QEVSLRRS RERR AIP DYI+FLQEH
Subjt:  PTLDVITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

TrEMBL top hitse value%identityAlignment
A0A151QZJ9 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-3455.03Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A+PY+P+E KL+SRT+SCYFV Y ERSRG+KFYNPT+ +FFE GNA+ LE++EF +    ++VVFEEE VI  + V+   TI     +  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

A0A151RB35 Retrovirus-related Pol polyprotein from transposon TNT 1-944.6e-3455.03Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A+PY+P+E KL+SRT+SCYFV Y ERSRG+KFYNPT+ +FFE GNA+ LE++EF +    ++VVFEEE VI  + V+   TI     +  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

A0A151RDQ3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-3354.36Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A+PY+P+E KL+SRT+SCYFV Y +RSRG+KFYNPT+ +FFE GNA+ LE++EF +    ++VVFEEE VI  + V+   TI     +  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

A0A151SD78 Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment)6.7e-3354.36Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD
        A PY+P+E KL+SRT+SCYFV Y ERSRG+KFYNPT+ +FFE GNA+ L ++EF +    ++VVFEEE VI  + V    TI    ++  D    +P  D
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLD

Query:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
        ++  QDN +     PI+Q Q +QEV LRRSTRER+SAIP DYIVFLQEH
Subjt:  VITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

A0A371GRJ1 Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment)2.3e-3354.25Show/hide
Query:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDV--VTLPTIVSKV--VLDNDTQDEV
        A+PY+P+E+KLDSRT+SCYFV YAERSRG+KFY+PTS +FFE GNA++LE +EF +    ++VVFEEE++   ND+  V +P  V +   V+ ++ Q  +
Subjt:  AKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEENVIIKNDV--VTLPTIVSKV--VLDNDTQDEV

Query:  PTLDVITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH
           D++  QD  +     PI+QPQ  QEVSLRRS RERR AIP DYI+FLQEH
Subjt:  PTLDVITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAAGCGGACAATATCATACCATTGTGGAGATACGTAGGGTACTCGGGTACCGTTGTCCTTAACATGGACAATGATGGTAGTGATAGTGATGAAGACAGTGAAGA
TGAAGAAGGTAGATTAGCAAAGCCTTATAAGCCAAATGAAAAGAAACTGGACTCAAGAACCATAAGTTGCTACTTTGTTAGGTATGCTGAGCGCTCTCGTGGCTTTAAGT
TCTATAATCCCACTTCAATAACCTTTTTCGAGATAGGAAATGCTCAACTTCTTGAGAATATTGAGTTTGAGGAGAGAAATAAAAGTAAAGATGTTGTCTTTGAAGAAGAA
AATGTTATTATCAAGAATGATGTGGTTACTTTACCTACCATTGTCAGTAAAGTAGTTTTAGATAATGACACTCAAGATGAAGTTCCAACGCTTGATGTCATTACCTTTCA
AGACAACACTAAGGACACATCACCCTTTCCTATAGATCAACCTCAACATACTCAAGAAGTGTCATTAAGAAGATCCACTAGAGAAAGAAGAAGTGCAATACCATATGATT
ATATTGTATTTCTTCAAGAACATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAAGCGGACAATATCATACCATTGTGGAGATACGTAGGGTACTCGGGTACCGTTGTCCTTAACATGGACAATGATGGTAGTGATAGTGATGAAGACAGTGAAGA
TGAAGAAGGTAGATTAGCAAAGCCTTATAAGCCAAATGAAAAGAAACTGGACTCAAGAACCATAAGTTGCTACTTTGTTAGGTATGCTGAGCGCTCTCGTGGCTTTAAGT
TCTATAATCCCACTTCAATAACCTTTTTCGAGATAGGAAATGCTCAACTTCTTGAGAATATTGAGTTTGAGGAGAGAAATAAAAGTAAAGATGTTGTCTTTGAAGAAGAA
AATGTTATTATCAAGAATGATGTGGTTACTTTACCTACCATTGTCAGTAAAGTAGTTTTAGATAATGACACTCAAGATGAAGTTCCAACGCTTGATGTCATTACCTTTCA
AGACAACACTAAGGACACATCACCCTTTCCTATAGATCAACCTCAACATACTCAAGAAGTGTCATTAAGAAGATCCACTAGAGAAAGAAGAAGTGCAATACCATATGATT
ATATTGTATTTCTTCAAGAACATTAG
Protein sequenceShow/hide protein sequence
MPKADNIIPLWRYVGYSGTVVLNMDNDGSDSDEDSEDEEGRLAKPYKPNEKKLDSRTISCYFVRYAERSRGFKFYNPTSITFFEIGNAQLLENIEFEERNKSKDVVFEEE
NVIIKNDVVTLPTIVSKVVLDNDTQDEVPTLDVITFQDNTKDTSPFPIDQPQHTQEVSLRRSTRERRSAIPYDYIVFLQEH