CuGenDBv2

Gene ID	Moc01g10130
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Genome location	chr1:6307058..6311796
RNA-Seq Expression	Moc01g10130
Synteny	Moc01g10130
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031826.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-51

57.33

Show/hide

Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

KAA0047792.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-51

57.33

Show/hide

Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-51

57.33

Show/hide

Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-51

57.33

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Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

KAA0062993.1 gag/pol protein [Cucumis melo var. makuwa]

4.3e-51

57.33

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Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

2.1e-51

57.33

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Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

A0A5A7TWB9 Gag/pol protein

2.1e-51

57.33

Show/hide

Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

A0A5A7TZD7 Gag/pol protein

2.1e-51

57.33

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Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

A0A5A7UGV2 Gag/pol protein

2.1e-51

57.33

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Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

A0A5A7V4M1 Gag/pol protein

2.1e-51

57.33

Show/hide

Query:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY
        VREHVLN+MV FN+AE NGAVIDE SQVSFILESLP+SFL FRSN VMNK+ YTLTT LNELQT++ LMK KGQ+GEANVATS ++F+RGS+SGTKS   
Subjt:  VREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSKGQEGEANVATS-KRFNRGSSSGTKSTSY

Query:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI
        SSG+K +KKK  G+G+K + AAA   K KAK + KG CFHCN + HWKRN P    +++K                                     +GI
Subjt:  SSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPT-----------------------------------KGI

Query:  SSWRQLDTGEMTLKVGTGEVVSAVA
        SSWRQL+TGEMT++VGTG VVSA+A
Subjt:  SSWRQLDTGEMTLKVGTGEVVSAVA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGAAGACGAAGCAGACTGCGCAGCAGCGCCGTGGCGCTGCCCTTAGGCACCGAGGCACTGTCCCGGGTGTTTTTCGGTGCATTTTCATGGTTCCAGTTCGC
GAACACGTTCTCAACCTGATGGTCCAGTTCAACATGGCTGAGTCGAACGGGGCTGTCATAGACGAGCAGAGTCAGGTCAGCTTCATTCTAGAATCTCTTCCGAAG
AGTTTCCTTCCATTCCGCAGCAATGTAGTTATGAATAAGCTGGAATACACTCTTACCACGCCCTTAAACGAGCTGCAGACCTACCAGTTTCTTATGAAGAGTAAG
GGACAAGAAGGGGAGGCAAATGTTGCCACCTCAAAGAGGTTCAATCGAGGTTCGTCCTCTGGAACCAAGTCTACGTCCTATTCTTCTGGAAGTAAGACTTTTAAG
AAGAAGGCTGCTGGTAAGGGGTCTAAACCTGACTCCGCTGCTGCCGCTGCCAAAAAAGGCAAGGCCAAGGTTTCAGAGAAAGGAAAGTGTTTCCACTGCAATTTG
GACGAGCATTGGAAGCGCAACTGGCCAAGTACTTGGCCAAAAAGAAGAAAGCCAACGAAGGGAATTAGTTCCTGGAGGCAGCTTGACACCGGAGAGATGACTCTC
AAGGTCGGAACGGGAGAGGTCGTCTCAGCTGTGGCAGACCATTTGGGAGTGCAAATTAATCAAAAGAAGCAAAAAGTCGGAAATACCATCATTGGAGGCGCCAGA
CGCCTGGGAAGGCTGCAGAAAACTGTTTTTCTTCCAACTTTGCCCTTAACGAAACGCGTCTTCCAATGCGTTTTGGTCGTTCCAACCGATGCATACGTGTAG

mRNA sequence

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Protein sequence

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MKKTKQTAQQRRGAALRHRGTVPGVFRCIFMVPVREHVLNLMVQFNMAESNGAVIDEQSQVSFILESLPKSFLPFRSNVVMNKLEYTLTTPLNELQTYQFLMKSK
GQEGEANVATSKRFNRGSSSGTKSTSYSSGSKTFKKKAAGKGSKPDSAAAAAKKGKAKVSEKGKCFHCNLDEHWKRNWPSTWPKRRKPTKGISSWRQLDTGEMTL
KVGTGEVVSAVADHLGVQINQKKQKVGNTIIGGARRLGRLQKTVFLPTLPLTKRVFQCVLVVPTDAYV

Moc01g10130 (gene) of Bitter gourd (OHB3-1) v2 genome